RNA id: TU81424


Basic Information

Item Value
RNA id TU81424
length 312
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G71442
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4641537 ~ 4641848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCGGAGATATATTAATAAATATCCTGACGCATCCGAGCTTTATAATGGCAGTGAGCGGGATCAACGAATATGAGCTGAAGAAAGTGCTTCCATCCACATCCATCCATCATAAACGTGTACTCCACACGGCTCCAGGAGGTTAATAAAGGCCTTCTGAAGTGAAGCGATGCGTTACGTTTGTGTTAAAAAAAAAAAAAAATCCATATATAACAAGTTATGAAGTGAAATATCTAGCTTCCGCCAGACCGCCTTCCGTATTCAACTTACGAAGAAATTGTAAAAGTTCAAAAAAGCTTATGCTACGTCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81219 lncRNA upstream 56316 4529356 ~ 4585221 (+) True G71239
TU81195 lncRNA upstream 88419 4544864 ~ 4547096 (+) True G71215
TU81218 lncRNA upstream 136053 4481638 ~ 4505484 (+) True G71238
TU81357 lncRNA upstream 294157 4346804 ~ 4347380 (+) True G71375
TU81287 lncRNA upstream 402131 4239125 ~ 4239406 (+) True G71305
TU81188 lncRNA downstream 64708 4706556 ~ 4710923 (+) True G71208
TU81460 lncRNA downstream 148808 4790656 ~ 4790866 (+) True G71478
TU81217 lncRNA downstream 150690 4792538 ~ 4850513 (+) True G71237
TU81470 lncRNA downstream 228740 4870588 ~ 4870819 (+) True G71488
TU81472 lncRNA downstream 233177 4875025 ~ 4875314 (+) True G71490
CI01000012_04595199_04620295.mRNA mRNA upstream 21084 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04578508_04582452.mRNA mRNA upstream 58927 4576995 ~ 4582610 (+) True CI01000012_04578508_04582452
CI01000012_04551570_04571150.mRNA mRNA upstream 70198 4551570 ~ 4571339 (+) False CI01000012_04551570_04571150
CI01000012_04514814_04539220.mRNA mRNA upstream 101938 4514814 ~ 4539599 (+) True CI01000012_04514814_04539220
CI01000012_04495631_04501066.mRNA mRNA upstream 140471 4495631 ~ 4501066 (+) False CI01000012_04495631_04501066
CI01000012_04647182_04692241.mRNA mRNA downstream 5334 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04722087_04836261.mRNA mRNA downstream 80239 4722087 ~ 4837574 (+) True CI01000012_04722087_04836261
CI01000012_04939174_04962741.mRNA mRNA downstream 296298 4938146 ~ 4962741 (+) True CI01000012_04939174_04962741
CI01000012_04966772_04976751.mRNA mRNA downstream 324867 4966715 ~ 4976903 (+) True CI01000012_04966772_04976751
CI01000012_04981435_05004449.mRNA mRNA downstream 339587 4981435 ~ 5005112 (+) True CI01000012_04981435_05004449
TU81162 other upstream 141448 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 215890 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 2010152 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2943301 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78310 other upstream 3956749 683523 ~ 684788 (+) True G68725
TU81129 other downstream 535047 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 535047 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 535047 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 535047 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 771402 5413250 ~ 5416785 (+) True G71199

Expression Profile