RNA id: TU82154


Basic Information

Item Value
RNA id TU82154
length 592
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G72054
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4734337 ~ 4745876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATTAGTTTTTCTTGTGGCTGAAGTTCCTTCCCCAGACAGTGTAGCATTTGCAGTTGTTCTCTTACCCAGGATTGTGTGCTTTCTTCCTGGGCCTGTAGATCTTTTAGTTCCCGGGAGAGAGTGTCTTGGAGTTCTGCCTGATGTTTTAGTTGTTGAGCCATATCCAGAACTCTTTTCCACTCATCTTCAATGTTTCTAAAGTTGTGAACGAGCTCCTGTCTTCTGGTGTCCTCCAAAATCTCATGAGCACATAAAGCATCTCCCTCTTCTTTCAGAGCCTCCAGTTTAGAATCACCTTCAGCACTTAGATTCAGAACAGCCTGAGCCTTCATTTGTTTCTTTTGGCTTGGCGTGTCTGTGCCCATGCACTCAAGTCCTTGCTTTAAATCTCTGATCCAGGCTCTGATCTGCTCTGCATTGGTTTGTAATGTTTCAGTTTGTTCATCGAGGGTCTTGTGGACTTGGGCCTGATTCTCCAAAAGAATCCCCAGGCTGTGGTACCGGTCTATCAGGGTCTCACTGTCTCTAAGGAAAGGGTCTCCCCTCAGGCCACGCATCCTTACAGTGGATAACAGGTCATTGAATGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82111 lncRNA downstream 105793 4638501 ~ 4638826 (-) True G72021
TU82109 lncRNA downstream 112828 4631495 ~ 4631791 (-) True G72019
TU82106 lncRNA downstream 116047 4628244 ~ 4628572 (-) True G72016
TU82104 lncRNA downstream 117439 4626919 ~ 4627180 (-) True G72014
TU81960 lncRNA downstream 158503 4582855 ~ 4586116 (-) True G71897
TU82161 lncRNA upstream 1017 4746444 ~ 4747188 (-) True G72055
TU82175 lncRNA upstream 11646 4757073 ~ 4759601 (-) False G72060
TU82177 lncRNA upstream 16003 4761430 ~ 4767781 (-) True G72060
TU82184 lncRNA upstream 22392 4767819 ~ 4770083 (-) True G72065
TU82198 lncRNA upstream 44707 4790134 ~ 4790584 (-) True G72071
CI01000012_04706769_04709074.mRNA mRNA downstream 35545 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04404769_04419096.mRNA mRNA downstream 325523 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04375448_04378813.mRNA mRNA downstream 365215 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04048205_04049218.mRNA mRNA downstream 695113 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 778879 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_04839741_04854323.mRNA mRNA upstream 94048 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 134013 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
CI01000012_04926292_04930302.mRNA mRNA upstream 180069 4925496 ~ 4930474 (-) True CI01000012_04926292_04930302
CI01000012_05022143_05030697.mRNA mRNA upstream 276316 5021743 ~ 5030697 (-) True CI01000012_05022143_05030697
CI01000012_05079456_05083333.mRNA mRNA upstream 333820 5079247 ~ 5083333 (-) True CI01000012_05079456_05083333
TU81962 other downstream 209947 4533530 ~ 4534672 (-) True G71898
TU80715 other downstream 1877727 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 3368321 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 3411718 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 3593421 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU82190 other upstream 30793 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 30793 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 548346 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 618215 5363642 ~ 5364083 (-) False G72235
TU82393 other upstream 618215 5363642 ~ 5364079 (-) True G72235

Expression Profile