RNA id: TU82190


Basic Information

Item Value
RNA id TU82190
length 378
RNA type TUCP
GC content 0.52
exon number 2
gene id G72068
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4776220 ~ 4780132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAATTAAACATTTCCTTGTATTTTTTAAATGCAGGCATGTGCGTTAGATCACCTGGCAGGTGTGAAGTTGATGCTCAATGCTGTCCTGCATAGCTACGTCCTGTGCTTGCTGTCTCGACCCGTCCAGGCTGACCTGTGCTCTCTCCAGGCACACCTCCAGCTGCTCGGCCCTCTCGCGGCAGGCATGGAGCAGCCCGTCACTGGACAACCATCCACCCGAGTACCTGGCTTCACCTGCGGCACACTCTGCTTTCTTTCTTTCTCTCTGTTTCCGTCTCACACCAGTTTGACCCTTTTGTTTGTGTGTTCTCTGCCCCCCTGGTGCAGCCTTTCTCTCAATAAACTGTCTCAGCTTTCATACCAGTCATTTGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82184 lncRNA downstream 6137 4767819 ~ 4770083 (-) True G72065
TU82177 lncRNA downstream 8439 4761430 ~ 4767781 (-) True G72060
TU82175 lncRNA downstream 16619 4757073 ~ 4759601 (-) False G72060
TU82161 lncRNA downstream 29032 4746444 ~ 4747188 (-) True G72055
TU82156 lncRNA downstream 30344 4745135 ~ 4745876 (-) True G72054
TU82198 lncRNA upstream 13299 4790134 ~ 4790584 (-) True G72071
TU82200 lncRNA upstream 14560 4791395 ~ 4796532 (-) False G72072
TU82199 lncRNA upstream 18284 4795119 ~ 4797561 (-) False G72072
TU82203 lncRNA upstream 19250 4796085 ~ 4797561 (-) True G72072
TU82273 lncRNA upstream 93369 4870204 ~ 4870468 (-) True G72130
CI01000012_04706769_04709074.mRNA mRNA downstream 67146 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04404769_04419096.mRNA mRNA downstream 357124 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04375448_04378813.mRNA mRNA downstream 396816 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04048205_04049218.mRNA mRNA downstream 726714 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 810480 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_04839741_04854323.mRNA mRNA upstream 62640 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 102605 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
CI01000012_04926292_04930302.mRNA mRNA upstream 148661 4925496 ~ 4930474 (-) True CI01000012_04926292_04930302
CI01000012_05022143_05030697.mRNA mRNA upstream 244908 5021743 ~ 5030697 (-) True CI01000012_05022143_05030697
CI01000012_05079456_05083333.mRNA mRNA upstream 302412 5079247 ~ 5083333 (-) True CI01000012_05079456_05083333
TU81962 other downstream 241548 4533530 ~ 4534672 (-) True G71898
TU80715 other downstream 1909328 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 3399922 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 3443319 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 3625022 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU82349 other upstream 516938 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 586807 5363642 ~ 5364083 (-) False G72235
TU82393 other upstream 586807 5363642 ~ 5364079 (-) True G72235
TU82465 other upstream 686005 5462840 ~ 5465857 (-) True G72294
TU82841 other upstream 1370176 6147011 ~ 6147494 (-) True G72629

Expression Profile