RNA id: TU81460


Basic Information

Item Value
RNA id TU81460
length 211
lncRNA type intronic
GC content 0.41
exon number 1
gene id G71478
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4790656 ~ 4790866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAACTGTTCCCTGAGCGGTTGGAAAGAAATGCCAGTCAGTTTCAAGTTCTTTATTTTGGAGCATTGTCTCCCTGAAGGAGAACATTAGGTTTAAATTTTTCTCATGAAGGTCATGCAGCCATGATTTCCTGTATCTCTCAGCAGCTAATGAAATCTGTGAGGAATAGAGTCTCTGTCCTTTCTTCATCCATTAGGATGCTCTCTTTCTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81188 lncRNA upstream 79733 4706556 ~ 4710923 (+) True G71208
TU81424 lncRNA upstream 148808 4641537 ~ 4641848 (+) True G71442
TU81219 lncRNA upstream 205435 4529356 ~ 4585221 (+) True G71239
TU81195 lncRNA upstream 237538 4544864 ~ 4547096 (+) True G71215
TU81218 lncRNA upstream 285172 4481638 ~ 4505484 (+) True G71238
TU81217 lncRNA downstream 1672 4792538 ~ 4850513 (+) True G71237
TU81470 lncRNA downstream 79722 4870588 ~ 4870819 (+) True G71488
TU81472 lncRNA downstream 84159 4875025 ~ 4875314 (+) True G71490
TU81178 lncRNA downstream 85539 4876405 ~ 4878412 (+) True G71198
TU81473 lncRNA downstream 87752 4878618 ~ 4878844 (+) True G71491
CI01000012_04647182_04692241.mRNA mRNA upstream 98180 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04595199_04620295.mRNA mRNA upstream 170203 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04578508_04582452.mRNA mRNA upstream 208046 4576995 ~ 4582610 (+) True CI01000012_04578508_04582452
CI01000012_04551570_04571150.mRNA mRNA upstream 219317 4551570 ~ 4571339 (+) False CI01000012_04551570_04571150
CI01000012_04514814_04539220.mRNA mRNA upstream 251057 4514814 ~ 4539599 (+) True CI01000012_04514814_04539220
CI01000012_04939174_04962741.mRNA mRNA downstream 147280 4938146 ~ 4962741 (+) True CI01000012_04939174_04962741
CI01000012_04966772_04976751.mRNA mRNA downstream 175849 4966715 ~ 4976903 (+) True CI01000012_04966772_04976751
CI01000012_04981435_05004449.mRNA mRNA downstream 190569 4981435 ~ 5005112 (+) True CI01000012_04981435_05004449
CI01000012_05006941_05018373.mRNA mRNA downstream 216075 5006941 ~ 5018880 (+) True CI01000012_05006941_05018373
CI01000012_05035890_05063488.mRNA mRNA downstream 244660 5035526 ~ 5064475 (+) True CI01000012_05035890_05063488
TU81162 other upstream 290567 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 365009 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 2159271 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 3092420 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78310 other upstream 4105868 683523 ~ 684788 (+) True G68725
TU81129 other downstream 386029 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 386029 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 386029 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 386029 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 622384 5413250 ~ 5416785 (+) True G71199

Expression Profile