RNA id: TU82199



Basic Information


Item Value
RNA id TU82199
length 1265
lncRNA type antisense_over
GC content 0.44
exon number 6
gene id G72072
representative False

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4791395 ~ 4797561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTCTTTAAAAAGATTCTTACTGACCCCAAACTTTTAAAAGGTAGTGTACGTCACAAGCAGAGCTCAAACAGCAATACAAAATCATATTAAACAATACACAGAAACATGCAGAGAATCGTCACCTGTCCTCTACATCTCCCTTCTGCAACAGAAGGAGAGATTCACTGATCACAGAGTGAAGGATCTGATGGCCTAAAGACAACTCAGCCTGAAAACACTAGAAGATAAGGAGAGAAAAAGTTAGATTTTTCATAGGATCTATGATCCATATAAGCAGCATTTGGGTGTGTGACTGTCATACCTGGTGCGTGCGTTGCTGCTCTCTTAGTCCAGGGTATGTTGATGCAATTTCTACAGCTAAACTGTCCTCCATGCGCTGTAGGAAAGCCAGCCAGCTCTCACATCTCTGCTCAAAGCTCTGTTGATGGAGAGAGGCTGCCTGCAACTCACTGCACTTCTCCTGGGCATGTGCGGAGGCCTGTGCCCACTTCCTGTTGAGGTGCTGTAGCTTCTGTGTCACAGAGTCACTGAGGGTCAACCTGTAGCTGAGTGTGTTTAGTAGATCCAGATCAGGAGAGAGAGAACTGATCTCCATCAGACCCGACTGAGATATATCTGTGTGTTCGCTGTCCATCCTTTGCTTGCTTTCCCACTGTTGTAATTGTGTTTCGAGGGACTGGTATAACCTTTCAAATTCCTGAAATTGCTCAAGATCCTCCTGCATGTGTTCAATTCGTCCTTTCAGAGTCTGCTCTAACTGCAGGTAACCTCGTGTTAACAAACGACATTCTGATCTGATGAAAACAGCATCTTCATCATCCACCTGTTCAATCAGATCTTTAGAAGCTTCAAGCATTTCATTCACATCAGTCTGCAGAGTCTCTGAACCTTTCTGTAACATAGTCTTCAGCTCTGCGATGCTGTGTGTGAGTTGTTTATTTTCAGCGGGTGTTTTGTTGTGTATGGCAAGCTGCTCTCTGTGACGTCGGAGCTGCTCTGAGCAGGTGCATCTCACATCAGAGTATCTCTGCCACACCTTCAGAAGACTGTGTGACCTCTTCAAGGTTTGTATGACCTTTTCCTTCACCTCTGACCACCTTGCTTTTTCTTTGTCTAGGTGCTCAGATAAAATCTGGGCAGAGTTTGTGCTAATTCCACCAATAAGGATTGATGTTGTCTTGTTAAGATCCTCCCACTGCCTGTCACACTCCTCAGTCTCAGCTTTTAAGACCTGTGATTATACGATCATAAAAAATAATGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82198 lncRNA downstream 4535 4790134 ~ 4790584 (-) True G72071
TU82184 lncRNA downstream 25036 4767819 ~ 4770083 (-) True G72065
TU82177 lncRNA downstream 27338 4761430 ~ 4767781 (-) True G72060
TU82175 lncRNA downstream 35518 4757073 ~ 4759601 (-) False G72060
TU82161 lncRNA downstream 47931 4746444 ~ 4747188 (-) True G72055
TU82273 lncRNA upstream 72643 4870204 ~ 4870468 (-) True G72130
TU82232 lncRNA upstream 78842 4876403 ~ 4878411 (-) True G72089
TU82278 lncRNA upstream 109337 4906898 ~ 4907339 (-) True G72135
TU82282 lncRNA upstream 115343 4912904 ~ 4913187 (-) True G72139
TU82284 lncRNA upstream 118875 4916436 ~ 4916669 (-) True G72141
CI01000012_04706769_04709074.mRNA mRNA downstream 86045 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04404769_04419096.mRNA mRNA downstream 376023 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04375448_04378813.mRNA mRNA downstream 415715 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04048205_04049218.mRNA mRNA downstream 745613 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 829379 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_04839741_04854323.mRNA mRNA upstream 41914 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 81879 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
CI01000012_04926292_04930302.mRNA mRNA upstream 127935 4925496 ~ 4930474 (-) True CI01000012_04926292_04930302
CI01000012_05022143_05030697.mRNA mRNA upstream 224182 5021743 ~ 5030697 (-) True CI01000012_05022143_05030697
CI01000012_05079456_05083333.mRNA mRNA upstream 281686 5079247 ~ 5083333 (-) True CI01000012_05079456_05083333
TU82191 other downstream 14987 4776220 ~ 4780132 (-) True G72068
TU82190 other downstream 18284 4776220 ~ 4776835 (-) False G72068
TU81962 other downstream 260447 4533530 ~ 4534672 (-) True G71898
TU80715 other downstream 1928227 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 3418821 1332075 ~ 1376298 (-) True G69562
TU82349 other upstream 496212 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 566081 5363642 ~ 5364083 (-) False G72235
TU82393 other upstream 566081 5363642 ~ 5364079 (-) True G72235
TU82465 other upstream 665279 5462840 ~ 5465857 (-) True G72294
TU82841 other upstream 1349450 6147011 ~ 6147494 (-) True G72629

Expression Profile