RNA id: TU81473


Basic Information

Item Value
RNA id TU81473
length 227
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G71491
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4878618 ~ 4878844 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAAAAAAAAAAAAAAAAATCCATATTTAACAAGTTATGAAGTAAAATATCTAGCTTCCGCCAGACCGCCTTCCGTATTCAACTTACGAAGAAAGTGTAAAACTCTCGCAGTTCAAAATGCTTACAATACGTCCTTCACCTTCCCTATTCAACTTATGGAAAAAGCTTAGTTCCATTTTTTTCGTAATTTGAATACGGAAGGCGGTCTGGTGGAAGCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81178 lncRNA upstream 206 4876405 ~ 4878412 (+) True G71198
TU81472 lncRNA upstream 3304 4875025 ~ 4875314 (+) True G71490
TU81470 lncRNA upstream 7799 4870588 ~ 4870819 (+) True G71488
TU81217 lncRNA upstream 28105 4792538 ~ 4850513 (+) True G71237
TU81460 lncRNA upstream 87752 4790656 ~ 4790866 (+) True G71478
TU81495 lncRNA downstream 27081 4905925 ~ 4906215 (+) True G71503
TU81498 lncRNA downstream 37203 4916047 ~ 4916273 (+) True G71506
TU81503 lncRNA downstream 42880 4921724 ~ 4922067 (+) True G71511
TU81505 lncRNA downstream 46140 4924984 ~ 4926637 (+) True G71512
TU81508 lncRNA downstream 48850 4927694 ~ 4930335 (+) True G71513
CI01000012_04722087_04836261.mRNA mRNA upstream 41044 4722087 ~ 4837574 (+) True CI01000012_04722087_04836261
CI01000012_04647182_04692241.mRNA mRNA upstream 186142 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04595199_04620295.mRNA mRNA upstream 258165 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04578508_04582452.mRNA mRNA upstream 296008 4576995 ~ 4582610 (+) True CI01000012_04578508_04582452
CI01000012_04551570_04571150.mRNA mRNA upstream 307279 4551570 ~ 4571339 (+) False CI01000012_04551570_04571150
CI01000012_04939174_04962741.mRNA mRNA downstream 59302 4938146 ~ 4962741 (+) True CI01000012_04939174_04962741
CI01000012_04966772_04976751.mRNA mRNA downstream 87871 4966715 ~ 4976903 (+) True CI01000012_04966772_04976751
CI01000012_04981435_05004449.mRNA mRNA downstream 102591 4981435 ~ 5005112 (+) True CI01000012_04981435_05004449
CI01000012_05006941_05018373.mRNA mRNA downstream 128097 5006941 ~ 5018880 (+) True CI01000012_05006941_05018373
CI01000012_05035890_05063488.mRNA mRNA downstream 156682 5035526 ~ 5064475 (+) True CI01000012_05035890_05063488
TU81162 other upstream 378529 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 452971 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 2247233 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 3180382 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78310 other upstream 4193830 683523 ~ 684788 (+) True G68725
TU81129 other downstream 298051 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 298051 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 298051 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 298051 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 534406 5413250 ~ 5416785 (+) True G71199

Expression Profile