RNA id: TU81498


Basic Information

Item Value
RNA id TU81498
length 227
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G71506
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4916047 ~ 4916273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACCCGGAAGCGAGTTAGCATTTTAGGACTTCTGGTTCCATCGCCGTAAAGTCTATGGGTTTTTTTAATGGGTTTTTGCTAAATCCCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCCGCTTGTGATTTTTTTAAACCTTTATTGTGTCTTAAAAACGGCAGTTGCCAACAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81495 lncRNA upstream 9832 4905925 ~ 4906215 (+) True G71503
TU81473 lncRNA upstream 37203 4878618 ~ 4878844 (+) True G71491
TU81178 lncRNA upstream 37635 4876405 ~ 4878412 (+) True G71198
TU81472 lncRNA upstream 40733 4875025 ~ 4875314 (+) True G71490
TU81470 lncRNA upstream 45228 4870588 ~ 4870819 (+) True G71488
TU81503 lncRNA downstream 5451 4921724 ~ 4922067 (+) True G71511
TU81505 lncRNA downstream 8711 4924984 ~ 4926637 (+) True G71512
TU81508 lncRNA downstream 11421 4927694 ~ 4930335 (+) True G71513
TU81513 lncRNA downstream 31762 4948035 ~ 4948288 (+) True G71518
TU81518 lncRNA downstream 117755 5034028 ~ 5034267 (+) True G71523
CI01000012_04722087_04836261.mRNA mRNA upstream 78473 4722087 ~ 4837574 (+) True CI01000012_04722087_04836261
CI01000012_04647182_04692241.mRNA mRNA upstream 223571 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04595199_04620295.mRNA mRNA upstream 295594 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04578508_04582452.mRNA mRNA upstream 333437 4576995 ~ 4582610 (+) True CI01000012_04578508_04582452
CI01000012_04551570_04571150.mRNA mRNA upstream 344708 4551570 ~ 4571339 (+) False CI01000012_04551570_04571150
CI01000012_04939174_04962741.mRNA mRNA downstream 21873 4938146 ~ 4962741 (+) True CI01000012_04939174_04962741
CI01000012_04966772_04976751.mRNA mRNA downstream 50442 4966715 ~ 4976903 (+) True CI01000012_04966772_04976751
CI01000012_04981435_05004449.mRNA mRNA downstream 65162 4981435 ~ 5005112 (+) True CI01000012_04981435_05004449
CI01000012_05006941_05018373.mRNA mRNA downstream 90668 5006941 ~ 5018880 (+) True CI01000012_05006941_05018373
CI01000012_05035890_05063488.mRNA mRNA downstream 119253 5035526 ~ 5064475 (+) True CI01000012_05035890_05063488
TU81162 other upstream 415958 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 490400 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 2284662 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 3217811 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78310 other upstream 4231259 683523 ~ 684788 (+) True G68725
TU81129 other downstream 260622 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 260622 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 260622 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 260622 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 496977 5413250 ~ 5416785 (+) True G71199

Expression Profile