RNA id: TU81205


Basic Information

Item Value
RNA id TU81205
length 2270
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G71225
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5409222 ~ 5411516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTGAGGGTGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAATCTGAAAATTGGTCAAAACTAAGCGACTAGTTGAAAGGGTTTATTTTTCTTACCCTGTTGGCAGAATGTTTTTTCTTGTTTTAAGTGTAAAGTCACTTAATTTTGATATATTTTTTTCAGGAAAACAAAACTTGTTATCTCATGTCATTTTGCTTCTCAAATAATTGTATCTTGATTTAGAAATGCTTAAATATTTATACAAGAAAACAAGACAAAAATTCAGATGCAGTGTGGAGTCCAATAGTGTGTCTTGATAAGCTAATCTTCAGTATACACTTCTATTCATCACCAGGCGTAATAAGCTATCGAATAATAATACAATCCAGATGCTTCATTAATGGCCAGACTGATTTCTGAGTGCTTTAGAAAAGTACAGGGTCTGTAGCTGTGATCTTTAGAGACATTTATCAGGACAATTTTTTTATTTGCAAACTTGTTTTTTATTCATATTGAGTGTATTATCTCAGCTGTCCTGCTGCGCTGTATTGACTTCCTCTCTGTATGTACACACGTCTGCATGTTTATGGTAGATTTAGCTTTCTGAACATGGTAGCCTACTGGGTTAGATGGAGAACATTGGACAGTTTATTTCTACAACTCTGTGGAGTTTTCAGGTTTTATTTGTCATACATGAATGAGATTGTACACCTTTAGAAGTGCTTTTTCCGGTCTCATGAATGTATAGTTCTTCTGTTATACTTCCATTCGAGATCACTGATTGTTCTGTGGTTTTCACTGTAGCATGAAACACATTGTCTTTCACAAATAATATGCTTGTTTAGTGACATCTTCACCATCCAAACTACCAGAATTAAACATGAGGGAACGTCTTTAAGAGGAAAGTTAGAATTTTTTGGCTTTAAGTTTGCAGCTATACAATAGTCAGGTACATTACTGCAGTTTTCCGGTGTTTGTGCATGTGCAGTATGTGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGATTCAGTGTAACTGATGGGTTCCAAAGTGAATGTGCATTGAATTTTGTTGGAGATTTTTGAGAATGTTGAGTTTGTTTTGCAGGTTTTTTAGTAGCATTTTGTGCAATATTTTTTATGTTTACACATATTTATTTCTTTAAATTATTTTTATATTTTTCACATTTTTATTATTTTGTGATGAAATTTATTAGGAGCAACATTCCTGTCTGGATTTTTGGACATGTTCAGACAAGAAGAGGTGAACATTTTTTTGCACATGTTTACAGCATCGTTATCCTCTGTCTCTCATTCCAATCTTTCATCTCTATACCGGCAAAAACTTCCTCTAGAGACAAAACAACATTTAGAGCCAAAACACAGAAGGGCTTATGTCTCTCTTCCCCTTTCTGTCACTTGAAACCAGATTTTGAACTTTTGTCATGCATACAACAAAATGAACTAGCAGTGTAAAATTCAGAGTCCTAAAATTTGGCAAGTTGGCTGAGGAGGAACTCTCACTTCATTCCATCAGGATGTGGAATAGGGGTGTATTTTTTCTGGCTTAAAGGAATGTGTAGCTATCATCAAGAGCATCTGCTGCCATTTATCAGCACAATAACTGTTGTCCTGGAGAGCAGGTGTTTTGGGTTCAGAAGCTGCTGCTATGAAACTTGTACTTGCACCCGAGCACATTAGACTTGTGTAAGAGCTCGATTAAAGCCCTGAAATGCTGAGATGTGGTGTTTTGTGACTGACTGTCTTAGTATAGAATACAAAACTCAAGAAAATGATTTGCACATTTTATTATCATCATCATAACTGCAAATAAATGAGACTAGACTGGCATTTTCCAAATTAATTCTCTCTTTCACTTAACATAAACATTAAGGCAAGACATAAACCATTGTTGTTGTTGTTTTTTCATGAACTGGTCAATTTTGAGATGTTGGGCTATTTTGATTATAGCAAGCATGTCTCTTTTTAGACTAGTGGAAAGAAAACATCCAAAATACACATTTAAGTCTTATTTATTACACTTTATCTATTTGCATCTATAGATTTCAATAACAATACATATTTTAAAGGCTGTTTTCTCAAAACACTTTCCCCCAAACCTTTTCAGTTTTATTCCTAGGCTATCTATATTCTGAAGGGGTTTGTTCATAAATAATTTACCTGATATGTAAAATTTTATTCTTAAGAAGATTATTTTTTTTCTGGCTGTTGACAGCATTTTATGGAGTGATAAAAACAGATATCCAAAATCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81151 lncRNA upstream 103649 5304404 ~ 5305573 (+) True G71171
TU81524 lncRNA upstream 246789 5161509 ~ 5162433 (+) True G71529
TU81152 lncRNA upstream 269254 5137470 ~ 5139968 (+) True G71172
TU81518 lncRNA upstream 374955 5034028 ~ 5034267 (+) True G71523
TU81513 lncRNA upstream 460934 4948035 ~ 4948288 (+) True G71518
TU81549 lncRNA downstream 138977 5550493 ~ 5561433 (+) True G71548
TU81561 lncRNA downstream 161301 5572817 ~ 5573228 (+) True G71559
TU81566 lncRNA downstream 197334 5608850 ~ 5611605 (+) True G71562
TU81610 lncRNA downstream 225852 5637368 ~ 5637671 (+) True G71599
TU81617 lncRNA downstream 260238 5671754 ~ 5672210 (+) True G71606
CI01000012_05390382_05407802.mRNA mRNA upstream 1078 5390014 ~ 5408144 (+) True CI01000012_05390382_05407802
CI01000012_05344320_05385222.mRNA mRNA upstream 23665 5344320 ~ 5385557 (+) True CI01000012_05344320_05385222
CI01000012_05262254_05301347.mRNA mRNA upstream 107121 5262196 ~ 5302101 (+) True CI01000012_05262254_05301347
CI01000012_05233556_05252071.mRNA mRNA upstream 156713 5233225 ~ 5252509 (+) True CI01000012_05233556_05252071
CI01000012_05198747_05229460.mRNA mRNA upstream 179544 5198172 ~ 5229678 (+) True CI01000012_05198747_05229460
CI01000012_05419501_05424708.mRNA mRNA downstream 7985 5419501 ~ 5424826 (+) True CI01000012_05419501_05424708
CI01000012_05425849_05469157.mRNA mRNA downstream 14333 5425849 ~ 5469157 (+) True CI01000012_05425849_05469157
CI01000012_05495596_05510317.mRNA mRNA downstream 83841 5495357 ~ 5510972 (+) True CI01000012_05495596_05510317
CI01000012_05523886_05527548.mRNA mRNA downstream 112370 5523886 ~ 5528161 (+) True CI01000012_05523886_05527548
CI01000012_05551775_05553851.mRNA mRNA downstream 140167 5551683 ~ 5554363 (+) True CI01000012_05551775_05553851
TU81129 other upstream 228252 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other upstream 228252 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other upstream 228252 5178778 ~ 5179220 (+) True G71159
TU81132 other upstream 228252 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81162 other upstream 909133 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81179 other downstream 1734 5413250 ~ 5416785 (+) True G71199
TU81198 other downstream 124336 5535852 ~ 5538384 (+) True G71218
TU81201 other downstream 127009 5538525 ~ 5540456 (+) True G71221
TU81545 other downstream 138977 5550493 ~ 5561433 (+) False G71548
TU81634 other downstream 402001 5813517 ~ 5816605 (+) False G71623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066204 True 1881 mRNA 0.36 2 NC_007118.7 32608319 ~ 32612560 (+)