RNA id: TU82465


Basic Information

Item Value
RNA id TU82465
length 748
RNA type TUCP
GC content 0.57
exon number 3
gene id G72294
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5462840 ~ 5465857 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGACAGGACAGAGAGGGATTGTGATGATGATGGTGGATGTAGTGAAGATGATGATGGGGGTGAGGATGGTTGTCCGTCCCCAGCCCTAAGGCTTCGTTTCCCAGCAGGCCTGCGAGCGTGTGGGCGTGTCGTTTGCAGGGTGGGATGGAGTGGGCGGAGAGAGAGCTGGAAGGGCCGGGTGGGTCAAGGTTGGCGGCTGAAGTGTTGGTGCCCAGGCGGAGTTGCAGGGAGGTGGGCAGCGTACGGAGAGAGAGCTGGCTGCTGGAGGAACGTCTGCAGGGCTCCAGACCCGTGACAGACGTGCGGAGCGAAGACTGGCGGCTGCTGCTGTGGCGATATGAGGACGACTGACTCACAACAGATGCACGAGCAGGAGACTGACGCACCAAACCAGAGAGGTGTGTAAGCGTGCAGTGCTGTAGGTCCTGAGCTGTGCTGGGAATCACTCGCTCCTGTCCCAGAATTCCCCGAATTCCCACTGCCACGTGTTGACAATAAAGTTTCGTATGTTGGCGATGCTGATTGGTCCTCCCAGTATGTGTCCAAGCTGGGGGTGTGTATTACAGTAAGATGTTGTCAGGGGAGACACATATATTGGGTATCCTATTGGCTGGTCACACGAAGAGTTGATCATGTTGCGTAGTGCTTGCTTGGCGTTCTGGATGCTTCCACGCTCCGGGTTTCTGTTTCTTAAAAACACCAATTCCTGCTGCTGCCCCGCCCACAGGCCACGCACACACTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82462 lncRNA downstream 11094 5450318 ~ 5451746 (-) True G72292
TU82398 lncRNA downstream 81170 5379266 ~ 5381670 (-) True G72239
TU82388 lncRNA downstream 139007 5323606 ~ 5323833 (-) True G72234
TU82386 lncRNA downstream 143397 5319228 ~ 5319443 (-) True G72232
TU82383 lncRNA downstream 149362 5313228 ~ 5313478 (-) True G72229
TU82471 lncRNA upstream 7826 5473683 ~ 5474580 (-) True G72300
TU82495 lncRNA upstream 49755 5515612 ~ 5518156 (-) True G72323
TU82507 lncRNA upstream 59063 5524920 ~ 5525132 (-) True G72332
TU82508 lncRNA upstream 59512 5525369 ~ 5525684 (-) True G72333
TU82509 lncRNA upstream 59936 5525793 ~ 5526023 (-) True G72334
CI01000012_05414096_05416676.mRNA mRNA downstream 46164 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 323165 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 339697 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05112839_05116264.mRNA mRNA downstream 346576 5111405 ~ 5116264 (-) True CI01000012_05112839_05116264
CI01000012_05091184_05092014.mRNA mRNA downstream 370826 5091021 ~ 5092014 (-) True CI01000012_05091184_05092014
CI01000012_05568600_05606181.mRNA mRNA upstream 102743 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05609848_05631772.mRNA mRNA upstream 142976 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05672517_05674075.mRNA mRNA upstream 206372 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 214180 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 272986 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
TU82391 other downstream 46060 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 46060 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 160634 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 682708 4776220 ~ 4780132 (-) True G72068
TU82190 other downstream 686005 4776220 ~ 4776835 (-) False G72068
TU82841 other upstream 681154 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1889395 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2798472 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2901162 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2901224 8367081 ~ 8367627 (-) False G74701

Expression Profile