RNA id: TU82495


Basic Information

Item Value
RNA id TU82495
length 2313
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G72323
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5515612 ~ 5518156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGTGTCGCGCGTGCCAGAGCCAGTCATGTTTCCGCTGTCATATATGCGATGCTAAAGGCTATTTATGTTAACCATTGCGATAATAAATACACACGTTTATGGAAAATACCAGGGACTGCTTGAGGAACGTAGACATTTCTTATATGATTATAATCGTGTATTTATTTGGTTTAATGTTTTCTGTCTCTTCCCTGTGCCTTTGTTGATACCGCGGATGCATACGCATCTTTCAGATTCACACACTCCGGTTAACTCCTGTTTTCCTCTCATGAGCTCCATCTGTTGCTCTGGCTGAAAGGATCAGGATAGACAGGAGAGATCGCTCAAACGTCCTCTGATCGCAATCATCACATAATTTAGAGGAAAATTAATAGAAATGCTCAGATAGTGACGTAAACATAGGGTATGTTATCAATATATTTCTAAATGTGTAAGCCTTTGGACTTAAAAACCGTAATAGAGTTGTTTTGTGCACTCTTGTGATCGTAAATGAATGGAAGCAGGTGCAACTGAATAGCTTGTTTACTTCGAACCGGAAGACGCTCCCACTTTTGACGCAAGGCCTCATGGGGCGTAGGAAACTTGTGGATACATGTTTTATTATTATCAGCTGTGGAATCCAACCATTACACATCTGAGGTAACGTAGTTAGCCTAGGCTACTTTATTGAGTATTTCCATTTTATGCAACTTTACATATTTACTATTAATAGTAAATTAATAATTAATAAAGTTAAGATCATCATGTTTGTAGCGTGATCCAGGGGATTAAAGTGGAGTAAATTATTCCTGGATTAAGCTACAAACATGATCTTATAGAACATGATGCATTGCTGTGTCTGTTATCCCATAATTCCCACTTTTGAACACAGTTAGTCTTGCTTTAACGGACATTAATATAAGACAACACTGCAAAAACAGTTTACTGTCAAGCTGTTATATATTTATTGTCCTATATTCCCAATTTTTCTCATGCATGTCCTTAATTTAATTTCATATGTTGGTATTAATTCAGTGTTTATAATACTAATACTTGAACTTAAAAGAATTTAACCCAAACTGACTGGTTTTCTAGAGATCAAAGGTTTTGTGAAAAAAGTGGAAGACTTAAACACAAAGTCTGTAAAATAAACTTAAAAGGATTTGATGATCACTAGCGATAGTATTTTATTCTGTGTTGTCATCATTTAGGTTGGATTTCAGCTTTAATGTAGATTTTTTTTTTTTTAATACAAAACAGCTGATATAGAGTACCTCAGAGTGTTTTTGTAGGCCAACCCCCAAGGGTGTGCTGGGTTGTAGGCTATAAACGGACTACAGCACACCAACGTCACCACCACCAAGCTTCCTCAAACTTTATTTAGAAAACAACTTTATTTAAAAACATGCTCGCTGATTATGATCTGTGCTGTGTATGAATACTTATCCACTTTTTCATGAGAAATGCTGTCCAAATGTCCTGTTTGTCATGATGACGTGATGAAGTCCCTGCCAAAGGAAGTAGTCCCTTTTAGCAACTTGTTAGCAACTGCCATTTTAAGACACAATAAAGGTTTAAAAAAATCACAAGTGGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAACGTGAAAATATTTAGAGGCTTTGTTAACCACAGATCTTATTTCAGGTGATTTAGCAAAAACCCATTCAAAAAACCCATAGACTTTAGGGCGATGGAACCGGAAGTCCTAAAATGCTAACTCGTTTCCAGGTTTTACCTACAAAAACAGGTCATCCCTGAGGTATTCTATTGCCATAGAAACTAGTGGACTATAAGAAACGTGCAGGCTATGTATAGGCCTTATGTGTATATGTAAATGATGCTTTGCCTTTATTATCATTTCATTATATGTAACTGTTACGACCTGCGTTCTTGTATTTGGTATGTGTTTGTTTTCTTTTCCCTTTTGTTTTGTCAGTGTTCTAATAGGTTGTCCAATGATGATTTCCACTCTCTCTATTGGCGGTTCAGAAGAGGCGTGGTCTTTATAAGGGCGCTGCCGGCGTTCAACATGGAGCTCATTCTTGGTTTGGCCGCGTTTGGATTGGGAGCTCCTGGATCCCTCCTCCGGCCGATGATCAAACTTGCTACCTTCTAGTGAAAGTGTGCCTTTTGTACAGCCTGTTCATCATGTTCAACTATTCCTAAAGTCATCTCTCAAGAACGTGGAGTGTAGGGGTGTCCTGCCTATTTATTTTGATAACTTGGTTTGTACTTTGTTTTTCGTTAGGGAGTTAGGGAAGGTAAATGTATTTTATTTTTATGTTCACTTAGGTTATTTAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82471 lncRNA downstream 41032 5473683 ~ 5474580 (-) True G72300
TU82462 lncRNA downstream 63866 5450318 ~ 5451746 (-) True G72292
TU82398 lncRNA downstream 133942 5379266 ~ 5381670 (-) True G72239
TU82388 lncRNA downstream 191779 5323606 ~ 5323833 (-) True G72234
TU82386 lncRNA downstream 196169 5319228 ~ 5319443 (-) True G72232
TU82507 lncRNA upstream 6764 5524920 ~ 5525132 (-) True G72332
TU82508 lncRNA upstream 7213 5525369 ~ 5525684 (-) True G72333
TU82509 lncRNA upstream 7637 5525793 ~ 5526023 (-) True G72334
TU82510 lncRNA upstream 12285 5530441 ~ 5530895 (-) True G72335
TU82503 lncRNA upstream 21796 5539952 ~ 5566228 (-) True G72328
CI01000012_05414096_05416676.mRNA mRNA downstream 98936 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 375937 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 392469 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05112839_05116264.mRNA mRNA downstream 399348 5111405 ~ 5116264 (-) True CI01000012_05112839_05116264
CI01000012_05091184_05092014.mRNA mRNA downstream 423598 5091021 ~ 5092014 (-) True CI01000012_05091184_05092014
CI01000012_05568600_05606181.mRNA mRNA upstream 50444 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05609848_05631772.mRNA mRNA upstream 90677 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05672517_05674075.mRNA mRNA upstream 154073 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 161881 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 220687 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
TU82465 other downstream 49755 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 98832 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 98832 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 213406 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 735480 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 628855 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1837096 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2746173 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2848863 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2848925 8367081 ~ 8367627 (-) False G74701

Expression Profile