RNA id: TU82508


Basic Information

Item Value
RNA id TU82508
length 316
lncRNA type intronic
GC content 0.41
exon number 1
gene id G72333
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5525369 ~ 5525684 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATTTCATGGTGACTTTAACAACTACTCTGTGCATACAGTGCAAATGTGATAACAAAATCTACATCATGTGCAGTGTACTGTATACACGTATATAATAAAGTATGGAAGTATGCCTTTTGAAAAAACAAAGTTAAAGTTATCTCTAACCCGTCTAGCCACAAATACTCACTGAAACACAAGGCTTCAAATAAAAGGAGGGACAGGCGAACACTTTCAGGTTCATATCACGAACCACGGCCATTGGTTTGACTCCTCTGTGGTTTGTCGCGGAAGCCGTCAATGATCTGTCGCGAGCAGATCAACAACAGAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82507 lncRNA downstream 237 5524920 ~ 5525132 (-) True G72332
TU82495 lncRNA downstream 7213 5515612 ~ 5518156 (-) True G72323
TU82471 lncRNA downstream 50789 5473683 ~ 5474580 (-) True G72300
TU82462 lncRNA downstream 73623 5450318 ~ 5451746 (-) True G72292
TU82398 lncRNA downstream 143699 5379266 ~ 5381670 (-) True G72239
TU82509 lncRNA upstream 109 5525793 ~ 5526023 (-) True G72334
TU82510 lncRNA upstream 4757 5530441 ~ 5530895 (-) True G72335
TU82503 lncRNA upstream 14268 5539952 ~ 5566228 (-) True G72328
TU82513 lncRNA upstream 50527 5576211 ~ 5576704 (-) True G72338
TU82515 lncRNA upstream 52118 5577802 ~ 5578006 (-) True G72340
CI01000012_05414096_05416676.mRNA mRNA downstream 108693 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 385694 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 402226 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05112839_05116264.mRNA mRNA downstream 409105 5111405 ~ 5116264 (-) True CI01000012_05112839_05116264
CI01000012_05091184_05092014.mRNA mRNA downstream 433355 5091021 ~ 5092014 (-) True CI01000012_05091184_05092014
CI01000012_05568600_05606181.mRNA mRNA upstream 42916 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05609848_05631772.mRNA mRNA upstream 83149 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05672517_05674075.mRNA mRNA upstream 146545 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 154353 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 213159 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
TU82465 other downstream 59512 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 108589 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 108589 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 223163 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 745237 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 621327 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1829568 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2738645 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2841335 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2841397 8367081 ~ 8367627 (-) False G74701

Expression Profile