RNA id: TU81561


Basic Information

Item Value
RNA id TU81561
length 412
lncRNA type intronic
GC content 0.46
exon number 1
gene id G71559
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5572817 ~ 5573228 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGACAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGACCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGTCTGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81549 lncRNA upstream 11384 5550493 ~ 5561433 (+) True G71548
TU81205 lncRNA upstream 161301 5409222 ~ 5411516 (+) True G71225
TU81151 lncRNA upstream 267244 5304404 ~ 5305573 (+) True G71171
TU81524 lncRNA upstream 410384 5161509 ~ 5162433 (+) True G71529
TU81152 lncRNA upstream 432849 5137470 ~ 5139968 (+) True G71172
TU81566 lncRNA downstream 35622 5608850 ~ 5611605 (+) True G71562
TU81610 lncRNA downstream 64140 5637368 ~ 5637671 (+) True G71599
TU81617 lncRNA downstream 98526 5671754 ~ 5672210 (+) True G71606
TU81618 lncRNA downstream 99814 5673042 ~ 5673257 (+) True G71607
TU81606 lncRNA downstream 165788 5739016 ~ 5739684 (+) True G71595
CI01000012_05565127_05567009.mRNA mRNA upstream 5587 5564939 ~ 5567230 (+) True CI01000012_05565127_05567009
CI01000012_05551775_05553851.mRNA mRNA upstream 18454 5551683 ~ 5554363 (+) True CI01000012_05551775_05553851
CI01000012_05523886_05527548.mRNA mRNA upstream 44656 5523886 ~ 5528161 (+) True CI01000012_05523886_05527548
CI01000012_05495596_05510317.mRNA mRNA upstream 61845 5495357 ~ 5510972 (+) True CI01000012_05495596_05510317
CI01000012_05425849_05469157.mRNA mRNA upstream 103660 5425849 ~ 5469157 (+) True CI01000012_05425849_05469157
CI01000012_05648602_05650699.mRNA mRNA downstream 75374 5648602 ~ 5651197 (+) True CI01000012_05648602_05650699
CI01000012_05659039_05669397.mRNA mRNA downstream 85811 5659039 ~ 5669584 (+) True CI01000012_05659039_05669397
CI01000012_05708007_05735678.mRNA mRNA downstream 134779 5708007 ~ 5735985 (+) True CI01000012_05708007_05735678
CI01000012_05748899_05754466.mRNA mRNA downstream 175671 5748899 ~ 5755254 (+) True CI01000012_05748899_05754466
CI01000012_05856793_05862577.mRNA mRNA downstream 283088 5856316 ~ 5862642 (+) True CI01000012_05856793_05862577
TU81545 other upstream 11384 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 32361 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 34433 5535852 ~ 5538384 (+) True G71218
TU81179 other upstream 156032 5413250 ~ 5416785 (+) True G71199
TU81131 other upstream 391847 5178778 ~ 5179220 (+) True G71159
TU81634 other downstream 240289 5813517 ~ 5816605 (+) False G71623
TU81687 other downstream 349938 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU83614 other downstream 2232875 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 2793578 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 2793776 8367004 ~ 8367627 (+) False G73578

Expression Profile