RNA id: TU82513


Basic Information

Item Value
RNA id TU82513
length 494
lncRNA type intronic
GC content 0.39
exon number 1
gene id G72338
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5576211 ~ 5576704 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTACGCAGAGAATCTAGTGGTAGAATAGCGACACTACACAATAAAGCATTTAAGAGTGTCACAGTAAGCAATCCACATATGTCCTGTGTTTCCTTTAATTATAAAACACTCAATTTATAATTTGTCTAGTTTTAAACATGATGCGTAATTGGTGTCAAACCCTATAAAAGACAGCTGTGAAAAACGTTTGTCCCAGTGCAATGGCTTATCTTGCGTTATTGGAAGACTTGGCAGAGAGCGCGTTTTCCAAGATCGTGCTGATCTGCTTGGCTAGAGCACAGAATCCTCTCTGTCATTATTGCGGTGAGGAAAAAAAATACAATCACGTGATTTTTAAAGGGAAGTGTTGTCACCATATATGGTTAATTGGAGGCGTTTCCGAATGCTAATGACCGTGAACGTGAACGAGCAGGGTATTTATGCACATGTGGGATTTATCAACAATGATTGCTTACTAATGTGCGTAAGAACTGTATGCGCACATTTGATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82503 lncRNA downstream 9983 5539952 ~ 5566228 (-) True G72328
TU82510 lncRNA downstream 45316 5530441 ~ 5530895 (-) True G72335
TU82509 lncRNA downstream 50188 5525793 ~ 5526023 (-) True G72334
TU82508 lncRNA downstream 50527 5525369 ~ 5525684 (-) True G72333
TU82507 lncRNA downstream 51079 5524920 ~ 5525132 (-) True G72332
TU82515 lncRNA upstream 1098 5577802 ~ 5578006 (-) True G72340
TU82517 lncRNA upstream 2388 5579092 ~ 5579394 (-) True G72342
TU82520 lncRNA upstream 7571 5584275 ~ 5584521 (-) True G72345
TU82524 lncRNA upstream 11545 5588249 ~ 5588602 (-) True G72349
TU82555 lncRNA upstream 60450 5637154 ~ 5637745 (-) False G72374
CI01000012_05414096_05416676.mRNA mRNA downstream 159535 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 436536 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 453068 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05112839_05116264.mRNA mRNA downstream 459947 5111405 ~ 5116264 (-) True CI01000012_05112839_05116264
CI01000012_05091184_05092014.mRNA mRNA downstream 484197 5091021 ~ 5092014 (-) True CI01000012_05091184_05092014
CI01000012_05609848_05631772.mRNA mRNA upstream 32129 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05672517_05674075.mRNA mRNA upstream 95525 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 103333 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 162139 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
CI01000012_05757115_05758767.mRNA mRNA upstream 180295 5756999 ~ 5758977 (-) True CI01000012_05757115_05758767
TU82465 other downstream 110354 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 159431 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 159431 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 274005 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 796079 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 570307 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1778548 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2687625 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2790315 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2790377 8367081 ~ 8367627 (-) False G74701

Expression Profile