RNA id: TU82554


Basic Information

Item Value
RNA id TU82554
length 313
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G72374
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5637154 ~ 5637745 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTGGGTAAATGTATGGGTTTTTACAGATCTTTCAATCTAATGGACAAAATAAGCTTGAGCAGTTTACATATGAATGCACCCAGAGATGACAGGAAAACATATTGAGAGCATCAGTGTTCGCTTCTGCTCTGACAGCCGTGAGACCAGCCGAACGCTGTGAGTGTGTGTTAGAAATCAGTAATGGTGAGAGAACATTGTGCTTGGTACGTTTTTCATCTTTAAACCAAACTTGGGTCTTCAGCCAACAAAGTTTAAATCCTGTCTGGCTCGAGCGCTTCCCATAATGTTTACACATTAGGTCAGTAGATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82524 lncRNA downstream 48773 5588249 ~ 5588602 (-) True G72349
TU82520 lncRNA downstream 52854 5584275 ~ 5584521 (-) True G72345
TU82517 lncRNA downstream 57981 5579092 ~ 5579394 (-) True G72342
TU82515 lncRNA downstream 59369 5577802 ~ 5578006 (-) True G72340
TU82513 lncRNA downstream 60671 5576211 ~ 5576704 (-) True G72338
TU82557 lncRNA upstream 1367 5639054 ~ 5639355 (-) True G72375
TU82567 lncRNA upstream 9961 5647648 ~ 5649127 (-) True G72379
TU82579 lncRNA upstream 33925 5671612 ~ 5671971 (-) True G72390
TU82580 lncRNA upstream 36493 5674180 ~ 5674635 (-) True CI01000012_05672517_05674075
TU82546 lncRNA upstream 58310 5695997 ~ 5710173 (-) True G72367
CI01000012_05609848_05631772.mRNA mRNA downstream 5443 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05568600_05606181.mRNA mRNA downstream 31194 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05414096_05416676.mRNA mRNA downstream 220699 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 497700 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 514232 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05672517_05674075.mRNA mRNA upstream 34542 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 42350 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 101156 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
CI01000012_05757115_05758767.mRNA mRNA upstream 119312 5756999 ~ 5758977 (-) True CI01000012_05757115_05758767
CI01000012_05761654_05801725.mRNA mRNA upstream 123654 5761341 ~ 5801725 (-) True CI01000012_05761654_05801725
TU82465 other downstream 171518 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 220595 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 220595 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 335169 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 857243 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 509324 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1717565 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2626642 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2729332 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2729394 8367081 ~ 8367627 (-) False G74701

Expression Profile