RNA id: TU81610


Basic Information

Item Value
RNA id TU81610
length 304
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G71599
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5637368 ~ 5637671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACTCTCCATCTACTGACCTAATGTGTAAACATTATGGGAAGCGCTCGAGCCAGACAGGATTTAAACTTTGTTGGCTGAAGACCCAAGTTTGGTTTAAAGATGAAAAACGTACCAAGCACAATGTTCTCTCACCATTACTGATTTCTAACACACACTCACAGCGTTCGGCTGGTCTCACGGCTGTCAGAGCAGAAGCGAACACTGATGCTCTCAATATGTTTTCCTGTCATCTCTGGGTGCATTCATATGTAAACTGCTCAAGCTTATTTTGTCCATTAGATTGAAAGATCTGTAAAAACCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81566 lncRNA upstream 25763 5608850 ~ 5611605 (+) True G71562
TU81561 lncRNA upstream 64140 5572817 ~ 5573228 (+) True G71559
TU81549 lncRNA upstream 75935 5550493 ~ 5561433 (+) True G71548
TU81205 lncRNA upstream 225852 5409222 ~ 5411516 (+) True G71225
TU81151 lncRNA upstream 331795 5304404 ~ 5305573 (+) True G71171
TU81617 lncRNA downstream 34083 5671754 ~ 5672210 (+) True G71606
TU81618 lncRNA downstream 35371 5673042 ~ 5673257 (+) True G71607
TU81606 lncRNA downstream 101345 5739016 ~ 5739684 (+) True G71595
TU81596 lncRNA downstream 128404 5766075 ~ 5768769 (+) True G71585
TU81629 lncRNA downstream 168130 5805801 ~ 5806063 (+) True G71618
CI01000012_05565127_05567009.mRNA mRNA upstream 70138 5564939 ~ 5567230 (+) True CI01000012_05565127_05567009
CI01000012_05551775_05553851.mRNA mRNA upstream 83005 5551683 ~ 5554363 (+) True CI01000012_05551775_05553851
CI01000012_05523886_05527548.mRNA mRNA upstream 109207 5523886 ~ 5528161 (+) True CI01000012_05523886_05527548
CI01000012_05495596_05510317.mRNA mRNA upstream 126396 5495357 ~ 5510972 (+) True CI01000012_05495596_05510317
CI01000012_05425849_05469157.mRNA mRNA upstream 168211 5425849 ~ 5469157 (+) True CI01000012_05425849_05469157
CI01000012_05648602_05650699.mRNA mRNA downstream 10931 5648602 ~ 5651197 (+) True CI01000012_05648602_05650699
CI01000012_05659039_05669397.mRNA mRNA downstream 21368 5659039 ~ 5669584 (+) True CI01000012_05659039_05669397
CI01000012_05708007_05735678.mRNA mRNA downstream 70336 5708007 ~ 5735985 (+) True CI01000012_05708007_05735678
CI01000012_05748899_05754466.mRNA mRNA downstream 111228 5748899 ~ 5755254 (+) True CI01000012_05748899_05754466
CI01000012_05856793_05862577.mRNA mRNA downstream 218645 5856316 ~ 5862642 (+) True CI01000012_05856793_05862577
TU81545 other upstream 75935 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 96912 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 98984 5535852 ~ 5538384 (+) True G71218
TU81179 other upstream 220583 5413250 ~ 5416785 (+) True G71199
TU81132 other upstream 456398 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81634 other downstream 175846 5813517 ~ 5816605 (+) False G71623
TU81687 other downstream 285495 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU83614 other downstream 2168432 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 2729135 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 2729333 8367004 ~ 8367627 (+) False G73578

Expression Profile