RNA id: TU82557


Basic Information

Item Value
RNA id TU82557
length 302
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G72375
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5639054 ~ 5639355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATACTGCTCCCACATCAAGAACCTTAAAGTGAAAATTCTGTCATTAATTACTCACCCTCATGTTCCATACCTGTAAGACTTTCATTCATCTTCAGAACACAAATGAAGATATTTTTTATTAAAATCTGAGAGATTTCTGTCCCTCCATTGACAGCTACGCAACTGACACTTTGACACTTCAAAAAGTTCACAAAGAGATAAAGACCACAACGCAGCCCTGACGTATCAGCAGAGATTGAGTCAACTAGATCATCCACTGTGAGGGCCTCATCGACACGACAGCCACGACACAGTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82555 lncRNA downstream 1309 5637154 ~ 5637745 (-) False G72374
TU82553 lncRNA downstream 1309 5637375 ~ 5637745 (-) False G72374
TU82556 lncRNA downstream 1367 5637154 ~ 5637687 (-) False G72374
TU82554 lncRNA downstream 1367 5637375 ~ 5637687 (-) True G72374
TU82524 lncRNA downstream 50452 5588249 ~ 5588602 (-) True G72349
TU82567 lncRNA upstream 8293 5647648 ~ 5649127 (-) True G72379
TU82579 lncRNA upstream 32257 5671612 ~ 5671971 (-) True G72390
TU82580 lncRNA upstream 34825 5674180 ~ 5674635 (-) True CI01000012_05672517_05674075
TU82546 lncRNA upstream 56642 5695997 ~ 5710173 (-) True G72367
TU82547 lncRNA upstream 72217 5711572 ~ 5719020 (-) True G72368
CI01000012_05609848_05631772.mRNA mRNA downstream 7122 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05568600_05606181.mRNA mRNA downstream 32873 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05414096_05416676.mRNA mRNA downstream 222378 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 499379 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 515911 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05672517_05674075.mRNA mRNA upstream 32874 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05680930_05690904.mRNA mRNA upstream 40682 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 99488 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
CI01000012_05757115_05758767.mRNA mRNA upstream 117644 5756999 ~ 5758977 (-) True CI01000012_05757115_05758767
CI01000012_05761654_05801725.mRNA mRNA upstream 121986 5761341 ~ 5801725 (-) True CI01000012_05761654_05801725
TU82465 other downstream 173197 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 222274 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 222274 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 336848 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 858922 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 507656 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1715897 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2624974 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2727664 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2727726 8367081 ~ 8367627 (-) False G74701

Expression Profile