RNA id: TU81618


Basic Information

Item Value
RNA id TU81618
length 216
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G71607
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5673042 ~ 5673257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGGGTGTTCCAGGATGGGTCTGTGCCAAAGCACAAGAGGCTTGGGGCTTCTGCTGCCTCAGATGGTGAGGAATTTTATGTTTTCCCTGCTTCATGGTCTTGCTGGGCACTGCTGCTCCCTCAAAGGGTTTACAGGCACATGTGCACCTTCCGGAGCCTAGGCATGCATGAGTGCTTCCTGTTGAGACCCAGGTGATTGCTGTGGCATGGGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81617 lncRNA upstream 832 5671754 ~ 5672210 (+) True G71606
TU81610 lncRNA upstream 35371 5637368 ~ 5637671 (+) True G71599
TU81566 lncRNA upstream 61437 5608850 ~ 5611605 (+) True G71562
TU81561 lncRNA upstream 99814 5572817 ~ 5573228 (+) True G71559
TU81549 lncRNA upstream 111609 5550493 ~ 5561433 (+) True G71548
TU81606 lncRNA downstream 65759 5739016 ~ 5739684 (+) True G71595
TU81596 lncRNA downstream 92818 5766075 ~ 5768769 (+) True G71585
TU81629 lncRNA downstream 132544 5805801 ~ 5806063 (+) True G71618
TU81630 lncRNA downstream 133264 5806521 ~ 5806785 (+) True G71619
TU81633 lncRNA downstream 136780 5810037 ~ 5811227 (+) True G71622
CI01000012_05659039_05669397.mRNA mRNA upstream 3458 5659039 ~ 5669584 (+) True CI01000012_05659039_05669397
CI01000012_05648602_05650699.mRNA mRNA upstream 21845 5648602 ~ 5651197 (+) True CI01000012_05648602_05650699
CI01000012_05565127_05567009.mRNA mRNA upstream 105812 5564939 ~ 5567230 (+) True CI01000012_05565127_05567009
CI01000012_05551775_05553851.mRNA mRNA upstream 118679 5551683 ~ 5554363 (+) True CI01000012_05551775_05553851
CI01000012_05523886_05527548.mRNA mRNA upstream 144881 5523886 ~ 5528161 (+) True CI01000012_05523886_05527548
CI01000012_05708007_05735678.mRNA mRNA downstream 34750 5708007 ~ 5735985 (+) True CI01000012_05708007_05735678
CI01000012_05748899_05754466.mRNA mRNA downstream 75642 5748899 ~ 5755254 (+) True CI01000012_05748899_05754466
CI01000012_05856793_05862577.mRNA mRNA downstream 183059 5856316 ~ 5862642 (+) True CI01000012_05856793_05862577
CI01000012_05909453_05916000.mRNA mRNA downstream 236196 5909453 ~ 5916174 (+) True CI01000012_05909453_05916000
CI01000012_05923216_05928055.mRNA mRNA downstream 249128 5922385 ~ 5929186 (+) False CI01000012_05923216_05928055
TU81545 other upstream 111609 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 132586 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 134658 5535852 ~ 5538384 (+) True G71218
TU81179 other upstream 256257 5413250 ~ 5416785 (+) True G71199
TU81132 other upstream 492072 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81634 other downstream 140260 5813517 ~ 5816605 (+) False G71623
TU81687 other downstream 249909 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU83614 other downstream 2132846 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 2693549 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 2693747 8367004 ~ 8367627 (+) False G73578

Expression Profile