RNA id: TU82546


Basic Information

Item Value
RNA id TU82546
length 1746
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G72367
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5695997 ~ 5710173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCATGTGACTCAACAGAGCAGTTCTGGACCTCTGCAGCGAGCGGTCCATCAGCTTGTGCAGTCTGAGGATCAGTTTACGCAGTCCCATCTGTTTAAGTGCCTTATCCACAAACGGCCTGTATATGGCAGTGGGACAGTAGCAGGTCTCGTTGTCCCGTGGGAGAAACTCCTCCTCTGAAATGAGGCGTGAAAACTTTGGTGTGAGGCAAGGCGACTGCTCCCCATCACTTGTCGCCTCGCTCAAGGTCCTTTCCTCCCCGTCGTTGTCGGCGGTGAAGGTAGCGGTGGACTCAGTGTCATCCTCATCATCCTCATTGCCACGGGAACAGCGAGGCGAGGGGATCTCGAAGATGGGCCAGCCGATGCGGGAAAGGTCCCTGAGGCCCAGCACGGTGCCCATTACACGCAGCTTCTGGTTCAGGTCCTGAGTGATATTGAGCCACAAGCAGAGCGCCTGCACCCTGCCCTGGAAATCCCGAGCTGCGTACTTTTCGTAGTCCTTCTGCAAGGTTTGCAGTGATGGGTAAAGAGCCTCCACTGACTCCAACAGAGACATGACCCGCTTGACCTGATCGAAAGCTACTCGCTGCCTTTGCAGGTGCTCCCGGCACTCCAGCGCTGAAGAAAGTGGAGCAGCGGCATCAATCTCTCCCCAGGACGTGGAACAGGTGGTAAAGCTAAACGGATCGTCCCTGCAGTTGGTTTCACCGTGACAGGAGTTGCTCTCCTCGACCGAGGCGTTGCTCTCAAGCCCGGCTAGGCTGCTATAATCCACTTTGAAGTGCAGAACCTCGTTGATGATGTCAGGTATGGCTTGGCGGGCAGTGTATAGGTACAAGTCCTGCTCATTGACGCTACGGCGGGCATGCCAGGCCTGCAACTCCAACCAGATGACCTCGTTGTTCTGGCCCATGAAGGCAGTGTTCTCCAGGCCACGCTGCTCCTTCTCCTTCTTCTTGGATGACATGGAGGTGAGTTTAAGCAGCAGCCGCAGAGTCTCAAAGAACTTGAGGCGGTCCGCCGGACAGTCTGTGCGTGAGGTCTGCCGGTGGGTGCGCACAGGCAGCATGCCCAGGCTCAGGTAGGGCTTGCGGGGATCCATGTTTCTGGAACCAATGGTACTGGACTTGGACACCGAATCCAGCATGAAGGAGCCCTCAAACTTGCTGTCCCGCTCGTTGGAGCGCTGATTGAAGCGCTGCTTCTTTTCCTGCTTGTAGCTGTGTTCTTCAGGAGGCTCGGCTGATCTGGCTCCTTCACGTTCTCGTTGAGACAACGGGCTGGAGGAAGACGGCTTCTCTTTGCCCTTTGACCCCTGGCTGTTTCTCTGGTGTTTGTTGGACATGCGTTTCATCTGCCGAGGAGTGCGGGGAGGGGAGGTGCTGTAGAGATTCTCCTCTTCCTGGCTGGGCTCGTCCCAAGACTCATCCACCTCAGTATTCCGCTGGGGCACATCTTTGGACGAGTCCTTGAGCCTGATCTCATCCGGAGGCTCCATAACCGGGTATGAATCGACGTGATGGCTCTCCTTTCACTCGTGCATGAATCAGAACATGTCCAGGAAAATAGAGGTCCTCTTTGCAAAGACTGGTCTATGATATAAGTCCAGGTGCACACTTTATTTCTCTATCCGTCTGCAGAGTTGAGGCTCGCCCGTGTGTGCACTGACGCCATGTTTCCAGCGAGCCGCTGATGAGGGAGTGACACACACTCTACGGCAGCTCGTGCAGTACACCAGACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82580 lncRNA downstream 21362 5674180 ~ 5674635 (-) True CI01000012_05672517_05674075
TU82579 lncRNA downstream 24026 5671612 ~ 5671971 (-) True G72390
TU82567 lncRNA downstream 46870 5647648 ~ 5649127 (-) True G72379
TU82557 lncRNA downstream 56642 5639054 ~ 5639355 (-) True G72375
TU82553 lncRNA downstream 58252 5637375 ~ 5637745 (-) False G72374
TU82547 lncRNA upstream 1399 5711572 ~ 5719020 (-) True G72368
TU82591 lncRNA upstream 36872 5747045 ~ 5747274 (-) True G72402
TU82592 lncRNA upstream 37319 5747492 ~ 5747711 (-) True G72403
TU82597 lncRNA upstream 202135 5912308 ~ 5914599 (-) True G72408
TU82595 lncRNA upstream 205463 5915636 ~ 5917433 (-) True G72406
CI01000012_05680930_05690904.mRNA mRNA downstream 5093 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05672517_05674075.mRNA mRNA downstream 20163 5672229 ~ 5675834 (-) False CI01000012_05672517_05674075
CI01000012_05609848_05631772.mRNA mRNA downstream 64065 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05568600_05606181.mRNA mRNA downstream 89816 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05414096_05416676.mRNA mRNA downstream 279321 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05738968_05745791.mRNA mRNA upstream 28670 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
CI01000012_05757115_05758767.mRNA mRNA upstream 46826 5756999 ~ 5758977 (-) True CI01000012_05757115_05758767
CI01000012_05761654_05801725.mRNA mRNA upstream 51168 5761341 ~ 5801725 (-) True CI01000012_05761654_05801725
CI01000012_05810254_05833540.mRNA mRNA upstream 99877 5810050 ~ 5833750 (-) True CI01000012_05810254_05833540
CI01000012_05847700_05849782.mRNA mRNA upstream 137313 5847486 ~ 5850156 (-) True CI01000012_05847700_05849782
TU82465 other downstream 230140 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 279217 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 279217 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 393791 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 915865 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 436838 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1645079 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2554156 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2656846 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2656908 8367081 ~ 8367627 (-) False G74701

Expression Profile