RNA id: TU82597


Basic Information

Item Value
RNA id TU82597
length 178
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G72408
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5912308 ~ 5914599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGATCTCTCCTTGACTTTCATCGTAGTAGGTATAACGGAAACGTTGACCCCAGTGGCAAAAGTCAGAGGAGATGATGAAGAGATTGGAGGGGTCAGCCAGGTATTTGCTTAGCAGCTTGCCATATTCCTGCTCTTTAGATTCACTCAGAGCTCCCACCAGCACAGGGACGATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82592 lncRNA downstream 164597 5747492 ~ 5747711 (-) True G72403
TU82591 lncRNA downstream 165034 5747045 ~ 5747274 (-) True G72402
TU82547 lncRNA downstream 193288 5711572 ~ 5719020 (-) True G72368
TU82546 lncRNA downstream 202135 5695997 ~ 5710173 (-) True G72367
TU82580 lncRNA downstream 237673 5674180 ~ 5674635 (-) True CI01000012_05672517_05674075
TU82595 lncRNA upstream 1037 5915636 ~ 5917433 (-) True G72406
TU82835 lncRNA upstream 225781 6140380 ~ 6140635 (-) True G72623
TU82838 lncRNA upstream 229476 6144075 ~ 6144275 (-) True G72626
TU82848 lncRNA upstream 242284 6156883 ~ 6157118 (-) True G72636
TU82876 lncRNA upstream 262711 6177310 ~ 6177658 (-) True G72662
CI01000012_05897865_05906600.mRNA mRNA downstream 5708 5897734 ~ 5906600 (-) True CI01000012_05897865_05906600
CI01000012_05889930_05893764.mRNA mRNA downstream 18544 5889930 ~ 5893764 (-) True CI01000012_05889930_05893764
CI01000012_05873142_05884821.mRNA mRNA downstream 27487 5872644 ~ 5884821 (-) True CI01000012_05873142_05884821
CI01000012_05847700_05849782.mRNA mRNA downstream 62152 5847486 ~ 5850156 (-) True CI01000012_05847700_05849782
CI01000012_05810254_05833540.mRNA mRNA downstream 78558 5810050 ~ 5833750 (-) True CI01000012_05810254_05833540
CI01000012_05932523_05940218.mRNA mRNA upstream 17890 5932489 ~ 5940218 (-) True CI01000012_05932523_05940218
CI01000012_05988471_06021245.mRNA mRNA upstream 72217 5986816 ~ 6021529 (-) True CI01000012_05988471_06021245
CI01000012_06147833_06153076.mRNA mRNA upstream 233096 6147695 ~ 6154203 (-) True CI01000012_06147833_06153076
CI01000012_06406744_06433128.mRNA mRNA upstream 492145 6406744 ~ 6433128 (-) True CI01000012_06406744_06433128
CI01000012_06496870_06580459.mRNA mRNA upstream 581544 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
TU82465 other downstream 446451 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 495528 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 495528 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 610102 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 1132176 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 232412 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1440653 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2349730 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2452420 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2452482 8367081 ~ 8367627 (-) False G74701

Expression Profile