RNA id: TU82841


Basic Information

Item Value
RNA id TU82841
length 484
RNA type TUCP
GC content 0.58
exon number 1
gene id G72629
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6147011 ~ 6147494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTAACACAGTTCGTATGATGGGGGAAGAAGGAGGCGGGAACCGGCGAACATTCAAACAATAAACTTTAATAAAATAAACAAAGAACAAAACGAAAGTAATGCCGGCAGACCCTCGCGGACGTCTGCCGGCCACACAAACATAATAAAACAAAATAAAGTCCAGGCCTGGTCCTCTCTCGTCCTTCACTATCGTCGCTCCTCCTTTTATGCTTCCGGAGCTCCTCCGTGAGAGACTCGAGGCCGGTGCGCCTCACAGGTGGAGCTCGTTAACCCTCGCGTCACCGGCCTCGCGCCGTTCCCTCACGGCTCTCGCCCGCCCTGCTCGTCACATACCCCCATCGCCCCTCGCAGGCCGGGGGGTACTCCCGAGACTGCGCTCTACTCCCCCCCGGGGCCTGTCTCGGCGGCCGCAGCACCTGGGGGTAAGGACAGACGAGACGAGAGAAAGGAGACGGAAGCAAGGGGAGCGACAGAACGAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82838 lncRNA downstream 2736 6144075 ~ 6144275 (-) True G72626
TU82835 lncRNA downstream 6376 6140380 ~ 6140635 (-) True G72623
TU82595 lncRNA downstream 229578 5915636 ~ 5917433 (-) True G72406
TU82597 lncRNA downstream 232412 5912308 ~ 5914599 (-) True G72408
TU82592 lncRNA downstream 399300 5747492 ~ 5747711 (-) True G72403
TU82848 lncRNA upstream 9389 6156883 ~ 6157118 (-) True G72636
TU82876 lncRNA upstream 29816 6177310 ~ 6177658 (-) True G72662
TU82857 lncRNA upstream 70119 6217613 ~ 6218979 (-) False G72644
TU82858 lncRNA upstream 70119 6217613 ~ 6218979 (-) True G72644
TU82889 lncRNA upstream 118428 6265922 ~ 6266386 (-) True G72675
CI01000012_05988471_06021245.mRNA mRNA downstream 125482 5986816 ~ 6021529 (-) True CI01000012_05988471_06021245
CI01000012_05932523_05940218.mRNA mRNA downstream 206793 5932489 ~ 5940218 (-) True CI01000012_05932523_05940218
CI01000012_05897865_05906600.mRNA mRNA downstream 240411 5897734 ~ 5906600 (-) True CI01000012_05897865_05906600
CI01000012_05889930_05893764.mRNA mRNA downstream 253247 5889930 ~ 5893764 (-) True CI01000012_05889930_05893764
CI01000012_05873142_05884821.mRNA mRNA downstream 262190 5872644 ~ 5884821 (-) True CI01000012_05873142_05884821
CI01000012_06147833_06153076.mRNA mRNA upstream 201 6147695 ~ 6154203 (-) True CI01000012_06147833_06153076
CI01000012_06406744_06433128.mRNA mRNA upstream 259250 6406744 ~ 6433128 (-) True CI01000012_06406744_06433128
CI01000012_06496870_06580459.mRNA mRNA upstream 348649 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
CI01000012_06597401_06599198.mRNA mRNA upstream 449794 6597288 ~ 6600700 (-) True CI01000012_06597401_06599198
CI01000012_06694889_06695185.mRNA mRNA upstream 547293 6694787 ~ 6695223 (-) True CI01000012_06694889_06695185
TU82465 other downstream 681154 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 730231 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 730231 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 844805 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 1366879 4776220 ~ 4780132 (-) True G72068
TU84502 other upstream 1207758 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2116835 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2219525 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2219587 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 2219587 8367081 ~ 8367643 (-) True G74701

Expression Profile