RNA id: TU82889


Basic Information

Item Value
RNA id TU82889
length 465
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G72675
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6265922 ~ 6266386 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTATTGATACACACCTTCTTACCTCTTACTCTAACTTTAGAAAACTTTATTTTCAAAGGTCAGTGGAAATTTTGTGTATATTTTAAAGAATTAGTTCACTTCAGAATTAAAATTTCCTGATAATTTACTCATCCCCATGTCATCCAGGATGTTTATGTCTTTCTTTCTTCAGTCGAAAAGAAATTAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCAGTGGGGTACGACTTAAAGATCCAAATTGCGGTTTCAGTGCAGCTTCAAAGGGCTCTACATGATCCCAGCCAAGGAATAAGGGTCTTGTCTAGCAAAACGGTCAATCATTTTCTAAAAAAAAAAAAAAAAAATTTATATACTTTTAAACCACAAATGCTCATCTTGCACTGCTCTGCGATGCACGACACATTACGTGTCCATTTTCTACTCTAATTTCAAAATAGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82857 lncRNA downstream 46943 6217613 ~ 6218979 (-) False G72644
TU82858 lncRNA downstream 46943 6217613 ~ 6218979 (-) True G72644
TU82876 lncRNA downstream 88264 6177310 ~ 6177658 (-) True G72662
TU82848 lncRNA downstream 108804 6156883 ~ 6157118 (-) True G72636
TU82838 lncRNA downstream 121647 6144075 ~ 6144275 (-) True G72626
TU82890 lncRNA upstream 178 6266564 ~ 6266771 (-) True G72676
TU82901 lncRNA upstream 19975 6286361 ~ 6286785 (-) True G72687
TU82915 lncRNA upstream 30814 6297200 ~ 6297507 (-) True G72699
TU82923 lncRNA upstream 37355 6303741 ~ 6304063 (-) True G72707
TU84477 lncRNA upstream 57972 6324358 ~ 6324570 (-) True G74063
CI01000012_06147833_06153076.mRNA mRNA downstream 111719 6147695 ~ 6154203 (-) True CI01000012_06147833_06153076
CI01000012_05988471_06021245.mRNA mRNA downstream 244393 5986816 ~ 6021529 (-) True CI01000012_05988471_06021245
CI01000012_05932523_05940218.mRNA mRNA downstream 325704 5932489 ~ 5940218 (-) True CI01000012_05932523_05940218
CI01000012_05897865_05906600.mRNA mRNA downstream 359322 5897734 ~ 5906600 (-) True CI01000012_05897865_05906600
CI01000012_05889930_05893764.mRNA mRNA downstream 372158 5889930 ~ 5893764 (-) True CI01000012_05889930_05893764
CI01000012_06406744_06433128.mRNA mRNA upstream 140358 6406744 ~ 6433128 (-) True CI01000012_06406744_06433128
CI01000012_06496870_06580459.mRNA mRNA upstream 229757 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
CI01000012_06597401_06599198.mRNA mRNA upstream 330902 6597288 ~ 6600700 (-) True CI01000012_06597401_06599198
CI01000012_06694889_06695185.mRNA mRNA upstream 428401 6694787 ~ 6695223 (-) True CI01000012_06694889_06695185
CI01000012_06713565_06749032.mRNA mRNA upstream 447070 6713456 ~ 6749070 (-) True CI01000012_06713565_06749032
TU82841 other downstream 118428 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 800065 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 849142 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 849142 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 963716 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 1088866 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1997943 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2100633 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2100695 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 2100695 8367081 ~ 8367643 (-) True G74701

Expression Profile