RNA id: TU82923


Basic Information

Item Value
RNA id TU82923
length 323
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G72707
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6303741 ~ 6304063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCTCGCAACAGCGCTGCGTTTCCCCACGGTTAGATCAGCACATTACACTTCAAATGTGCGCATCTTCCACACAGGACAGCAGTCTGACTGGATATCTTCCCAAATCGTCCCTCTCTATCATTTTCGTCTCGTTTTTATTCGCTGACGAAAATTTGAGTACATTTTAGTCATAGTTTTAGTCATTCAAAACGCATTTTTATTTAGTCATCGTCTCGTTTTCGTCTGTGAAAAAATGTTCGTCAACGAAATTAACACTGTTACACGCCTGTGCTTATGCATTCTTATACAGAGCACTCGCACCAAATGTGCATACCTATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82915 lncRNA downstream 6234 6297200 ~ 6297507 (-) True G72699
TU82901 lncRNA downstream 16956 6286361 ~ 6286785 (-) True G72687
TU82890 lncRNA downstream 36970 6266564 ~ 6266771 (-) True G72676
TU82889 lncRNA downstream 37355 6265922 ~ 6266386 (-) True G72675
TU82857 lncRNA downstream 84762 6217613 ~ 6218979 (-) False G72644
TU84477 lncRNA upstream 20295 6324358 ~ 6324570 (-) True G74063
TU84480 lncRNA upstream 23829 6327892 ~ 6328128 (-) True G74066
TU84636 lncRNA upstream 230814 6534877 ~ 6536637 (-) True G74215
TU84557 lncRNA upstream 465770 6769833 ~ 6858642 (-) True G74142
TU84664 lncRNA upstream 606961 6911024 ~ 6911324 (-) True CI01000012_06872835_06911259
CI01000012_06147833_06153076.mRNA mRNA downstream 149538 6147695 ~ 6154203 (-) True CI01000012_06147833_06153076
CI01000012_05988471_06021245.mRNA mRNA downstream 282212 5986816 ~ 6021529 (-) True CI01000012_05988471_06021245
CI01000012_05932523_05940218.mRNA mRNA downstream 363523 5932489 ~ 5940218 (-) True CI01000012_05932523_05940218
CI01000012_05897865_05906600.mRNA mRNA downstream 397141 5897734 ~ 5906600 (-) True CI01000012_05897865_05906600
CI01000012_05889930_05893764.mRNA mRNA downstream 409977 5889930 ~ 5893764 (-) True CI01000012_05889930_05893764
CI01000012_06406744_06433128.mRNA mRNA upstream 102681 6406744 ~ 6433128 (-) True CI01000012_06406744_06433128
CI01000012_06496870_06580459.mRNA mRNA upstream 192080 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
CI01000012_06597401_06599198.mRNA mRNA upstream 293225 6597288 ~ 6600700 (-) True CI01000012_06597401_06599198
CI01000012_06694889_06695185.mRNA mRNA upstream 390724 6694787 ~ 6695223 (-) True CI01000012_06694889_06695185
CI01000012_06713565_06749032.mRNA mRNA upstream 409393 6713456 ~ 6749070 (-) True CI01000012_06713565_06749032
TU82841 other downstream 156247 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 837884 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 886961 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 886961 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1001535 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 1051189 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1960266 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2062956 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2063018 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 2063018 8367081 ~ 8367643 (-) True G74701

Expression Profile