RNA id: TU83518



Basic Information


Item Value
RNA id TU83518
length 321
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G73254
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7344595 ~ 7344915 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCAATCTAGCCGCCACTATATTTTGCGGTTCGCGCATACACTGGCTATTACGGTAAGACCAGGGGCGATTCTAGGGTCAGAGCTTTAGGGGTGCTGAGCACCCAATGAGCCCCACTGCCACCACCCACCCTCTTTTCACACAAAAACAAAAAATATGTTACAAAAAGTAAATGTAATATAGGCTACTTAATGCCAATAAGTTAGTATAGGAGTATGAGTAGTTACTGTTTTGCTTGCCACTATTCACTATATGTCAATTTATTGTTGTTGTTTCCTCACCTGGTTCTTCCTGCATGCTCTCCCTTTCCCTTTCTCCTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83517 lncRNA upstream 5620 7338770 ~ 7338975 (+) True G73253
TU83483 lncRNA upstream 83530 7260860 ~ 7261065 (+) True G73224
TU83482 lncRNA upstream 84557 7259826 ~ 7260038 (+) True G73223
TU83396 lncRNA upstream 113152 7231186 ~ 7231443 (+) True G73150
TU82985 lncRNA upstream 256974 7074666 ~ 7087621 (+) True G72757
TU83440 lncRNA downstream 591 7345506 ~ 7345781 (+) True G73181
TU83519 lncRNA downstream 2735 7347650 ~ 7347902 (+) True G73255
TU83521 lncRNA downstream 27157 7372072 ~ 7372408 (+) True G73257
TU83522 lncRNA downstream 27674 7372589 ~ 7372814 (+) True G73258
TU83418 lncRNA downstream 50453 7395368 ~ 7400277 (+) False G73162
CI01000012_07312430_07315865.mRNA mRNA upstream 28678 7311672 ~ 7315917 (+) True CI01000012_07312430_07315865
CI01000012_07136101_07161117.mRNA mRNA upstream 183047 7136017 ~ 7161548 (+) True CI01000012_07136101_07161117
CI01000012_07120539_07126148.mRNA mRNA upstream 218323 7120539 ~ 7126272 (+) True CI01000012_07120539_07126148
CI01000012_07111569_07113225.mRNA mRNA upstream 231363 7111569 ~ 7113232 (+) True CI01000012_07111569_07113225
CI01000012_07108281_07109521.mRNA mRNA upstream 234673 7108281 ~ 7109922 (+) True CI01000012_07108281_07109521
CI01000012_07348648_07352865.mRNA mRNA downstream 3733 7348648 ~ 7353209 (+) True CI01000012_07348648_07352865
CI01000012_07359292_07362314.mRNA mRNA downstream 13800 7358715 ~ 7362378 (+) True CI01000012_07359292_07362314
CI01000012_07401962_07405598.mRNA mRNA downstream 57047 7401962 ~ 7405598 (+) True CI01000012_07401962_07405598
CI01000012_07409605_07427042.mRNA mRNA downstream 64077 7408992 ~ 7427309 (+) True CI01000012_07409605_07427042
CI01000012_07429147_07434790.mRNA mRNA downstream 84232 7429147 ~ 7434846 (+) True CI01000012_07429147_07434790
TU81687 other upstream 1420290 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1527990 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 1783162 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 1804139 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 1806211 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 461188 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 1021891 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 1022089 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 1022162 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2877040 10221955 ~ 10222037 (+) True G75291

Expression Profile