RNA id: TU83522


Basic Information

Item Value
RNA id TU83522
length 226
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G73258
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7372589 ~ 7372814 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCTAACCTGAAAAGAAGGGGTCTCCATTTCTGTAGACCTTCACACTCTTGACGGGAGGCAGGTGATTAGTGACACCAGTGGATGCCATGACCCTAAACTAGCCACATTAACACACACCTGTAATACAAACACAAACAGAGATGAACCCCTATATAGGATAACTTACTTATGCCATCAAAATGTAACCATACATTTGATAACAAAACTGTAAAAGTACAGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83521 lncRNA upstream 181 7372072 ~ 7372408 (+) True G73257
TU83519 lncRNA upstream 24687 7347650 ~ 7347902 (+) True G73255
TU83440 lncRNA upstream 26808 7345506 ~ 7345781 (+) True G73181
TU83518 lncRNA upstream 27674 7344595 ~ 7344915 (+) True G73254
TU83517 lncRNA upstream 33614 7338770 ~ 7338975 (+) True G73253
TU83418 lncRNA downstream 22554 7395368 ~ 7400277 (+) False G73162
TU83419 lncRNA downstream 22554 7395368 ~ 7399433 (+) True G73162
TU83526 lncRNA downstream 47879 7420693 ~ 7421889 (+) True G73262
TU83434 lncRNA downstream 334861 7707675 ~ 7715446 (+) True G73175
TU83596 lncRNA downstream 361482 7734296 ~ 7734698 (+) True G73321
CI01000012_07359292_07362314.mRNA mRNA upstream 10211 7358715 ~ 7362378 (+) True CI01000012_07359292_07362314
CI01000012_07348648_07352865.mRNA mRNA upstream 19380 7348648 ~ 7353209 (+) True CI01000012_07348648_07352865
CI01000012_07312430_07315865.mRNA mRNA upstream 56672 7311672 ~ 7315917 (+) True CI01000012_07312430_07315865
CI01000012_07136101_07161117.mRNA mRNA upstream 211041 7136017 ~ 7161548 (+) True CI01000012_07136101_07161117
CI01000012_07120539_07126148.mRNA mRNA upstream 246317 7120539 ~ 7126272 (+) True CI01000012_07120539_07126148
CI01000012_07401962_07405598.mRNA mRNA downstream 29148 7401962 ~ 7405598 (+) True CI01000012_07401962_07405598
CI01000012_07409605_07427042.mRNA mRNA downstream 36178 7408992 ~ 7427309 (+) True CI01000012_07409605_07427042
CI01000012_07429147_07434790.mRNA mRNA downstream 56333 7429147 ~ 7434846 (+) True CI01000012_07429147_07434790
CI01000012_07441851_07459661.mRNA mRNA downstream 69037 7441851 ~ 7459786 (+) True CI01000012_07441851_07459661
CI01000012_07464278_07478699.mRNA mRNA downstream 91464 7464278 ~ 7478992 (+) True CI01000012_07464278_07478699
TU81687 other upstream 1448284 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1555984 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 1811156 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 1832133 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 1834205 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 433289 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 993992 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 994190 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 994263 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2849141 10221955 ~ 10222037 (+) True G75291

Expression Profile