RNA id: TU83526



Basic Information


Item Value
RNA id TU83526
length 279
lncRNA type intronic
GC content 0.34
exon number 2
gene id G73262
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7420693 ~ 7421889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATGTCCTGATGTCCAGCAGGAAAGCAGTGTGTAATTTGCCTTACCATTTAAAATGGGGTTGGTTTTTTATATATACACACACACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGGTAAAATCATTTAAGTTCATTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTANNNNNNNNNNAGAAATGAAATATCACATGG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83418 lncRNA upstream 20416 7395368 ~ 7400277 (+) False G73162
TU83419 lncRNA upstream 21260 7395368 ~ 7399433 (+) True G73162
TU83522 lncRNA upstream 47879 7372589 ~ 7372814 (+) True G73258
TU83521 lncRNA upstream 48285 7372072 ~ 7372408 (+) True G73257
TU83519 lncRNA upstream 72791 7347650 ~ 7347902 (+) True G73255
TU83434 lncRNA downstream 285786 7707675 ~ 7715446 (+) True G73175
TU83596 lncRNA downstream 312407 7734296 ~ 7734698 (+) True G73321
TU83641 lncRNA downstream 380032 7801921 ~ 7802123 (+) True G73346
TU83675 lncRNA downstream 433454 7855343 ~ 7855654 (+) True G73359
TU83679 lncRNA downstream 447509 7869398 ~ 7869602 (+) True G73363
CI01000012_07401962_07405598.mRNA mRNA upstream 15095 7401962 ~ 7405598 (+) True CI01000012_07401962_07405598
CI01000012_07359292_07362314.mRNA mRNA upstream 58315 7358715 ~ 7362378 (+) True CI01000012_07359292_07362314
CI01000012_07348648_07352865.mRNA mRNA upstream 67484 7348648 ~ 7353209 (+) True CI01000012_07348648_07352865
CI01000012_07312430_07315865.mRNA mRNA upstream 104776 7311672 ~ 7315917 (+) True CI01000012_07312430_07315865
CI01000012_07136101_07161117.mRNA mRNA upstream 259145 7136017 ~ 7161548 (+) True CI01000012_07136101_07161117
CI01000012_07429147_07434790.mRNA mRNA downstream 7258 7429147 ~ 7434846 (+) True CI01000012_07429147_07434790
CI01000012_07441851_07459661.mRNA mRNA downstream 19962 7441851 ~ 7459786 (+) True CI01000012_07441851_07459661
CI01000012_07464278_07478699.mRNA mRNA downstream 42389 7464278 ~ 7478992 (+) True CI01000012_07464278_07478699
CI01000012_07480048_07492395.mRNA mRNA downstream 58159 7480048 ~ 7492766 (+) True CI01000012_07480048_07492395
CI01000012_07497278_07501713.mRNA mRNA downstream 75341 7497230 ~ 7502298 (+) True CI01000012_07497278_07501713
TU81687 other upstream 1496388 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1604088 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 1859260 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 1880237 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 1882309 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 384214 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 944917 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 945115 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 945188 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2800066 10221955 ~ 10222037 (+) True G75291

Expression Profile