Item | Value |
---|---|
RNA id | TU83526 |
length | 279 |
lncRNA type | intronic |
GC content | 0.34 |
exon number | 2 |
gene id | G73262 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000012 |
NCBI id | null |
chromosome length | 13770000 |
location | 7420693 ~ 7421889 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU83418 | lncRNA | upstream | 20416 | 7395368 ~ 7400277 (+) | False | G73162 |
TU83419 | lncRNA | upstream | 21260 | 7395368 ~ 7399433 (+) | True | G73162 |
TU83522 | lncRNA | upstream | 47879 | 7372589 ~ 7372814 (+) | True | G73258 |
TU83521 | lncRNA | upstream | 48285 | 7372072 ~ 7372408 (+) | True | G73257 |
TU83519 | lncRNA | upstream | 72791 | 7347650 ~ 7347902 (+) | True | G73255 |
TU83434 | lncRNA | downstream | 285786 | 7707675 ~ 7715446 (+) | True | G73175 |
TU83596 | lncRNA | downstream | 312407 | 7734296 ~ 7734698 (+) | True | G73321 |
TU83641 | lncRNA | downstream | 380032 | 7801921 ~ 7802123 (+) | True | G73346 |
TU83675 | lncRNA | downstream | 433454 | 7855343 ~ 7855654 (+) | True | G73359 |
TU83679 | lncRNA | downstream | 447509 | 7869398 ~ 7869602 (+) | True | G73363 |
CI01000012_07401962_07405598.mRNA | mRNA | upstream | 15095 | 7401962 ~ 7405598 (+) | True | CI01000012_07401962_07405598 |
CI01000012_07359292_07362314.mRNA | mRNA | upstream | 58315 | 7358715 ~ 7362378 (+) | True | CI01000012_07359292_07362314 |
CI01000012_07348648_07352865.mRNA | mRNA | upstream | 67484 | 7348648 ~ 7353209 (+) | True | CI01000012_07348648_07352865 |
CI01000012_07312430_07315865.mRNA | mRNA | upstream | 104776 | 7311672 ~ 7315917 (+) | True | CI01000012_07312430_07315865 |
CI01000012_07136101_07161117.mRNA | mRNA | upstream | 259145 | 7136017 ~ 7161548 (+) | True | CI01000012_07136101_07161117 |
CI01000012_07429147_07434790.mRNA | mRNA | downstream | 7258 | 7429147 ~ 7434846 (+) | True | CI01000012_07429147_07434790 |
CI01000012_07441851_07459661.mRNA | mRNA | downstream | 19962 | 7441851 ~ 7459786 (+) | True | CI01000012_07441851_07459661 |
CI01000012_07464278_07478699.mRNA | mRNA | downstream | 42389 | 7464278 ~ 7478992 (+) | True | CI01000012_07464278_07478699 |
CI01000012_07480048_07492395.mRNA | mRNA | downstream | 58159 | 7480048 ~ 7492766 (+) | True | CI01000012_07480048_07492395 |
CI01000012_07497278_07501713.mRNA | mRNA | downstream | 75341 | 7497230 ~ 7502298 (+) | True | CI01000012_07497278_07501713 |
TU81687 | other | upstream | 1496388 | 5923166 ~ 5924305 (+) | True | CI01000012_05923216_05928055 |
TU81634 | other | upstream | 1604088 | 5813517 ~ 5816605 (+) | False | G71623 |
TU81545 | other | upstream | 1859260 | 5550493 ~ 5561433 (+) | False | G71548 |
TU81201 | other | upstream | 1880237 | 5538525 ~ 5540456 (+) | True | G71221 |
TU81198 | other | upstream | 1882309 | 5535852 ~ 5538384 (+) | True | G71218 |
TU83614 | other | downstream | 384214 | 7806103 ~ 7807855 (+) | True | CI01000012_07806089_07811902 |
TU83914 | other | downstream | 944917 | 8366806 ~ 8367627 (+) | False | G73578 |
TU83912 | other | downstream | 945115 | 8367004 ~ 8367627 (+) | False | G73578 |
TU83911 | other | downstream | 945188 | 8367077 ~ 8367627 (+) | True | G73578 |
TU85876 | other | downstream | 2800066 | 10221955 ~ 10222037 (+) | True | G75291 |