RNA id: TU83641


Basic Information

Item Value
RNA id TU83641
length 203
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G73346
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7801921 ~ 7802123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATTGGACGAGTCATATACAGTACCTCTCGGATTTCATCAAAAAGTATCTTAATTTGTGTTCCATGAACATGAACAATATATTTTTACATCATTAGTTAACCTTTGTCAATGTTAGTTAATAAAAATGTTCATGTTAGTTCGAAGTGCAGTGGCTAATGTTAACAGATACAACTTTTGATCTTAAAAATATTTTTGTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83596 lncRNA upstream 67223 7734296 ~ 7734698 (+) True G73321
TU83434 lncRNA upstream 86475 7707675 ~ 7715446 (+) True G73175
TU83526 lncRNA upstream 380032 7420693 ~ 7421889 (+) True G73262
TU83418 lncRNA upstream 401644 7395368 ~ 7400277 (+) False G73162
TU83419 lncRNA upstream 402488 7395368 ~ 7399433 (+) True G73162
TU83675 lncRNA downstream 53220 7855343 ~ 7855654 (+) True G73359
TU83679 lncRNA downstream 67275 7869398 ~ 7869602 (+) True G73363
TU83680 lncRNA downstream 78527 7880650 ~ 7880875 (+) True G73364
TU83686 lncRNA downstream 100326 7902449 ~ 7902830 (+) True G73370
TU83696 lncRNA downstream 117434 7919557 ~ 7919765 (+) True G73380
CI01000012_07769675_07800004.mRNA mRNA upstream 1680 7769200 ~ 7800241 (+) True CI01000012_07769675_07800004
CI01000012_07678377_07700760.mRNA mRNA upstream 99727 7678377 ~ 7702194 (+) True CI01000012_07678377_07700760
CI01000012_07645586_07647322.mRNA mRNA upstream 153959 7643680 ~ 7647962 (+) True CI01000012_07645586_07647322
CI01000012_07584742_07586196.mRNA mRNA upstream 215549 7584742 ~ 7586372 (+) True CI01000012_07584742_07586196
CI01000012_07566408_07581870.mRNA mRNA upstream 219975 7566408 ~ 7581946 (+) True CI01000012_07566408_07581870
CI01000012_07806089_07811902.mRNA mRNA downstream 3125 7805248 ~ 7811902 (+) False CI01000012_07806089_07811902
CI01000012_07812015_07812349.mRNA mRNA downstream 9892 7812015 ~ 7812653 (+) True CI01000012_07812015_07812349
CI01000012_07817578_07821568.mRNA mRNA downstream 15455 7817578 ~ 7822023 (+) True CI01000012_07817578_07821568
CI01000012_07822979_07844745.mRNA mRNA downstream 20287 7822410 ~ 7845560 (+) True CI01000012_07822979_07844745
CI01000012_07847662_07849170.mRNA mRNA downstream 44421 7846544 ~ 7849734 (+) True CI01000012_07847662_07849170
TU81687 other upstream 1877616 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1985316 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2240488 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2261465 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 2263537 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 3980 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 564683 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 564881 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 564954 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2419832 10221955 ~ 10222037 (+) True G75291

Expression Profile