RNA id: TU83675


Basic Information

Item Value
RNA id TU83675
length 312
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G73359
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7855343 ~ 7855654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATCTTTCTCTTGAAAATATCCCATAGATTCAGGTCAGGCATATTGGCTGGCCAATAAAGCACAGTAATATCATGCTCAGCAAACCACTTGGAAGTGGTTTTTGCACTGTGGGCAGGTGCTAAAGTCCTGCTGGAAAAGGAAATCAGCATCTCCATAAAGCTTGTCAGCAGATGGAAGCATAAAGTGCTCCAAAATCTCCTGGAAGATGGCTGCATTGACTTTGCACTTGATAAAACACAATGGACCAACACCAGCAGACGTCACGGCCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83641 lncRNA upstream 53220 7801921 ~ 7802123 (+) True G73346
TU83596 lncRNA upstream 120645 7734296 ~ 7734698 (+) True G73321
TU83434 lncRNA upstream 139897 7707675 ~ 7715446 (+) True G73175
TU83526 lncRNA upstream 433454 7420693 ~ 7421889 (+) True G73262
TU83418 lncRNA upstream 455066 7395368 ~ 7400277 (+) False G73162
TU83679 lncRNA downstream 13744 7869398 ~ 7869602 (+) True G73363
TU83680 lncRNA downstream 24996 7880650 ~ 7880875 (+) True G73364
TU83686 lncRNA downstream 46795 7902449 ~ 7902830 (+) True G73370
TU83696 lncRNA downstream 63903 7919557 ~ 7919765 (+) True G73380
TU83697 lncRNA downstream 64415 7920069 ~ 7920408 (+) True G73381
CI01000012_07847662_07849170.mRNA mRNA upstream 5609 7846544 ~ 7849734 (+) True CI01000012_07847662_07849170
CI01000012_07822979_07844745.mRNA mRNA upstream 9783 7822410 ~ 7845560 (+) True CI01000012_07822979_07844745
CI01000012_07817578_07821568.mRNA mRNA upstream 33320 7817578 ~ 7822023 (+) True CI01000012_07817578_07821568
CI01000012_07812015_07812349.mRNA mRNA upstream 42690 7812015 ~ 7812653 (+) True CI01000012_07812015_07812349
CI01000012_07806089_07811902.mRNA mRNA upstream 43441 7805248 ~ 7811902 (+) False CI01000012_07806089_07811902
CI01000012_08159919_08162280.mRNA mRNA downstream 303953 8159607 ~ 8162336 (+) True CI01000012_08159919_08162280
CI01000012_08234924_08239665.mRNA mRNA downstream 379105 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08264407_08270366.mRNA mRNA downstream 408348 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08307719_08308987.mRNA mRNA downstream 452065 8307719 ~ 8309221 (+) True CI01000012_08307719_08308987
CI01000012_08312903_08334243.mRNA mRNA downstream 457249 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
TU83614 other upstream 47488 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 1931038 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 2038738 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2293910 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2314887 5538525 ~ 5540456 (+) True G71221
TU83914 other downstream 511152 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 511350 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 511423 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2366301 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 3289163 11144817 ~ 11145739 (+) True G75533

Expression Profile