RNA id: TU84966


Basic Information

Item Value
RNA id TU84966
length 232
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G74492
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7869384 ~ 7869615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTTATGTGTATTTAAATGTCTGAAACGTAAAAAAAAAAAAAAAAACCATTATGTGGCTGAAAACACTGCATAGTTGTGATATATGACAAGCGCTGAGCGCATCCGTCTCGCAGCCATAGCGTGAAAGCACAGTTTGAATCTGGCAGTTATGTGACGTCACTGAACGTTCTAAATCCCATATGTGGGACCGTACTCTCAGGGGCACAGAAATAAAAATCCTATATGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84964 lncRNA downstream 13731 7855299 ~ 7855653 (-) True G74490
TU84945 lncRNA downstream 32918 7833362 ~ 7836466 (-) True G74477
TU84843 lncRNA downstream 174687 7693376 ~ 7694697 (-) True G74381
TU84839 lncRNA downstream 268002 7601141 ~ 7601382 (-) True G74378
TU84837 lncRNA downstream 271265 7597913 ~ 7598119 (-) True G74376
TU84972 lncRNA upstream 29002 7898617 ~ 7898858 (-) True G74498
TU84974 lncRNA upstream 33365 7902980 ~ 7903181 (-) True G74500
TU84975 lncRNA upstream 33681 7903296 ~ 7903629 (-) True G74501
TU84976 lncRNA upstream 34533 7904148 ~ 7904393 (-) True G74502
TU84978 lncRNA upstream 36542 7906157 ~ 7906421 (-) True G74504
CI01000012_07813654_07814853.mRNA mRNA downstream 54531 7812900 ~ 7814853 (-) True CI01000012_07813654_07814853
CI01000012_07761466_07761786.mRNA mRNA downstream 107253 7761432 ~ 7762131 (-) True CI01000012_07761466_07761786
CI01000012_07716912_07750520.mRNA mRNA downstream 118864 7716655 ~ 7750520 (-) True CI01000012_07716912_07750520
CI01000012_07705100_07707005.mRNA mRNA downstream 162157 7703949 ~ 7707227 (-) True CI01000012_07705100_07707005
CI01000012_07556881_07563284.mRNA mRNA downstream 305991 7556106 ~ 7563393 (-) True CI01000012_07556881_07563284
CI01000012_07925520_07928491.mRNA mRNA upstream 55841 7925456 ~ 7928491 (-) True CI01000012_07925520_07928491
CI01000012_07930029_07934648.mRNA mRNA upstream 59677 7929292 ~ 7934881 (-) True CI01000012_07930029_07934648
CI01000012_07938822_07940632.mRNA mRNA upstream 69199 7938814 ~ 7941045 (-) True CI01000012_07938822_07940632
CI01000012_07956050_07959414.mRNA mRNA upstream 86372 7955987 ~ 7959414 (-) True CI01000012_07956050_07959414
CI01000012_08156754_08159438.mRNA mRNA upstream 286454 8156069 ~ 8159438 (-) True CI01000012_08156754_08159438
TU84502 other downstream 510839 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 1721890 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 2403527 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 2452604 5363642 ~ 5364083 (-) False G72235
TU85146 other upstream 394714 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 497404 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 497466 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 497466 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 1198291 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536

Expression Profile