RNA id: TU83680


Basic Information

Item Value
RNA id TU83680
length 226
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G73364
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7880650 ~ 7880875 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATCCTCAGAGGGGCTTAACCCCCAGTTAGAATGTGTAGCAAGAGGCCATTGCCTTAGTCAGGGGTGTCCAGACCTGCTCCTGGAGGGCCACTGTCCTGCAGAGTTCAGCTCCAACCCCAATTAAACACACCTGAACCAGCTAATCAAGGTATTACTAGGCACACTAGAAAATTCCAGGCAGGTGTGTTGAGGCAAGTTAAAGCCAAGGACGGAGTTTGGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83679 lncRNA upstream 11048 7869398 ~ 7869602 (+) True G73363
TU83675 lncRNA upstream 24996 7855343 ~ 7855654 (+) True G73359
TU83641 lncRNA upstream 78527 7801921 ~ 7802123 (+) True G73346
TU83596 lncRNA upstream 145952 7734296 ~ 7734698 (+) True G73321
TU83434 lncRNA upstream 165204 7707675 ~ 7715446 (+) True G73175
TU83686 lncRNA downstream 21574 7902449 ~ 7902830 (+) True G73370
TU83696 lncRNA downstream 38682 7919557 ~ 7919765 (+) True G73380
TU83697 lncRNA downstream 39194 7920069 ~ 7920408 (+) True G73381
TU83786 lncRNA downstream 175095 8055970 ~ 8056414 (+) True G73461
TU83788 lncRNA downstream 202955 8083830 ~ 8084032 (+) True G73463
CI01000012_07847662_07849170.mRNA mRNA upstream 30916 7846544 ~ 7849734 (+) True CI01000012_07847662_07849170
CI01000012_07822979_07844745.mRNA mRNA upstream 35090 7822410 ~ 7845560 (+) True CI01000012_07822979_07844745
CI01000012_07817578_07821568.mRNA mRNA upstream 58627 7817578 ~ 7822023 (+) True CI01000012_07817578_07821568
CI01000012_07812015_07812349.mRNA mRNA upstream 67997 7812015 ~ 7812653 (+) True CI01000012_07812015_07812349
CI01000012_07806089_07811902.mRNA mRNA upstream 68748 7805248 ~ 7811902 (+) False CI01000012_07806089_07811902
CI01000012_08159919_08162280.mRNA mRNA downstream 278732 8159607 ~ 8162336 (+) True CI01000012_08159919_08162280
CI01000012_08234924_08239665.mRNA mRNA downstream 353884 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08264407_08270366.mRNA mRNA downstream 383127 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08307719_08308987.mRNA mRNA downstream 426844 8307719 ~ 8309221 (+) True CI01000012_08307719_08308987
CI01000012_08312903_08334243.mRNA mRNA downstream 432028 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
TU83614 other upstream 72795 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 1956345 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 2064045 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2319217 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2340194 5538525 ~ 5540456 (+) True G71221
TU83914 other downstream 485931 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 486129 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 486202 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2341080 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 3263942 11144817 ~ 11145739 (+) True G75533

Expression Profile