RNA id: TU85170


Basic Information

Item Value
RNA id TU85170
length 708
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G74659
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8271989 ~ 8272696 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGATTTTAACTTAAACACCTCTGATTGGCCATTGCGTTCAAGAAAGCAATAGATATGTCTGTGATTGGCTACTGAGCTCAATGCTGCAAAACGCATTGTAAATAGAAACCTTTAATGCTCTCCAAAGCTCAGACACAAATACGTACTGGAGCATTTGCCAAAAAAGTTTTGCCATCAATGGGCCCTAAGCAGCCGCTTACCTCACTTATTGGATAAAGTCCAGCCTGCTCGCTATTTTAAAATGCTCATAAATTGGCCAAATCATGTTTATATTTAAATATAATGATTTACACAACTTTCTGTTAGGGTTAGGTGTCAGATTAGGACATAATATCACTGTTCTCACTAATATATAGTGCAACAAACCTGTATGTATTGTTTTGACTTGCTTTGTGAGGACTGTCTTCATAATGTAGTGTCTCTACCACTACATTATGAGCTGTCTTCATAAATCAAATGGCAAAATGAACATACAATGTTTTATTAAAATCTAAAATGGCCAAAAGTGTTCTGTGAGAGTTGTGTTTAGAGGTTAAGTGATAGAAAATATGAGCTTAGTATACAAAATAATTACGCCTGTGGAAAGTCTTCATAATGATAGATGTGCCAGCATGTATGTGAACATCCACATTTGTGTAGACTTCCCGACACTGTAGATTTCTTTTTTTGTAAACTATTTATCTGAAATTTGTTACCCTAGCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85163 lncRNA downstream 13450 8258312 ~ 8258539 (-) True G74652
TU85123 lncRNA downstream 66797 8204928 ~ 8205192 (-) True G74627
TU85120 lncRNA downstream 69386 8202389 ~ 8202603 (-) True G74624
TU85105 lncRNA downstream 82748 8188902 ~ 8189241 (-) True G74612
TU85102 lncRNA downstream 99922 8171847 ~ 8172067 (-) True G74609
TU85172 lncRNA upstream 667 8273363 ~ 8273956 (-) True G74661
TU85173 lncRNA upstream 1328 8274024 ~ 8274252 (-) True G74662
TU85174 lncRNA upstream 1576 8274272 ~ 8274486 (-) True G74663
TU85175 lncRNA upstream 2032 8274728 ~ 8274933 (-) True G74664
TU85177 lncRNA upstream 7355 8280051 ~ 8280288 (-) True G74666
CI01000012_08247043_08252830.mRNA mRNA downstream 19031 8246417 ~ 8252958 (-) True CI01000012_08247043_08252830
CI01000012_08156754_08159438.mRNA mRNA downstream 112551 8156069 ~ 8159438 (-) True CI01000012_08156754_08159438
CI01000012_07956050_07959414.mRNA mRNA downstream 312575 7955987 ~ 7959414 (-) True CI01000012_07956050_07959414
CI01000012_07938822_07940632.mRNA mRNA downstream 330944 7938814 ~ 7941045 (-) True CI01000012_07938822_07940632
CI01000012_07930029_07934648.mRNA mRNA downstream 337108 7929292 ~ 7934881 (-) True CI01000012_07930029_07934648
CI01000012_08376626_08388293.mRNA mRNA upstream 103922 8376618 ~ 8388293 (-) True CI01000012_08376626_08388293
CI01000012_08399430_08416750.mRNA mRNA upstream 125070 8397766 ~ 8417291 (-) True CI01000012_08399430_08416750
CI01000012_08423495_08432094.mRNA mRNA upstream 150108 8422804 ~ 8432094 (-) True CI01000012_08423495_08432094
CI01000012_08445692_08459897.mRNA mRNA upstream 172962 8445658 ~ 8459897 (-) True CI01000012_08445692_08459897
CI01000012_08489570_08491016.mRNA mRNA upstream 216402 8489098 ~ 8492326 (-) True CI01000012_08489570_08491016
TU85146 other downstream 6335 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 913444 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 2124495 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 2806132 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 2855209 5363642 ~ 5364083 (-) False G72235
TU85219 other upstream 94323 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 94385 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 94385 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 795210 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 798675 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410

Expression Profile