RNA id: TU85177


Basic Information

Item Value
RNA id TU85177
length 238
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G74666
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8280051 ~ 8280288 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTCTTTTCAGAAGCTGCATCTGAATTGGTATTTAGATATATTTACAGACCAAAACTGTTTGGTTACCAACATTCTTCAAAATATCTGCTTTTATGTTCCGCAAAAGAAAGTCATATTGGTTTGAAACGACATAAGGGTGAGTAAATGTAAATAAACAGAATTTTTATTTTTGGGTATCTCCAAAATATGATTTTTTTTTAACTAAATGATACTCTAAATAAGAAAATAAACTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85175 lncRNA downstream 5118 8274728 ~ 8274933 (-) True G74664
TU85174 lncRNA downstream 5565 8274272 ~ 8274486 (-) True G74663
TU85173 lncRNA downstream 5799 8274024 ~ 8274252 (-) True G74662
TU85172 lncRNA downstream 6095 8273363 ~ 8273956 (-) True G74661
TU85170 lncRNA downstream 7355 8271989 ~ 8272696 (-) True G74659
TU85200 lncRNA upstream 57569 8337857 ~ 8338934 (-) True G74686
TU85201 lncRNA upstream 59816 8340104 ~ 8340325 (-) True G74687
TU85213 lncRNA upstream 75779 8356067 ~ 8356638 (-) True G74696
TU85211 lncRNA upstream 76502 8356790 ~ 8357385 (-) False G74695
TU85212 lncRNA upstream 76622 8356910 ~ 8357499 (-) True G74695
CI01000012_08247043_08252830.mRNA mRNA downstream 27093 8246417 ~ 8252958 (-) True CI01000012_08247043_08252830
CI01000012_08156754_08159438.mRNA mRNA downstream 120613 8156069 ~ 8159438 (-) True CI01000012_08156754_08159438
CI01000012_07956050_07959414.mRNA mRNA downstream 320637 7955987 ~ 7959414 (-) True CI01000012_07956050_07959414
CI01000012_07938822_07940632.mRNA mRNA downstream 339006 7938814 ~ 7941045 (-) True CI01000012_07938822_07940632
CI01000012_07930029_07934648.mRNA mRNA downstream 345170 7929292 ~ 7934881 (-) True CI01000012_07930029_07934648
CI01000012_08376626_08388293.mRNA mRNA upstream 96330 8376618 ~ 8388293 (-) True CI01000012_08376626_08388293
CI01000012_08399430_08416750.mRNA mRNA upstream 117478 8397766 ~ 8417291 (-) True CI01000012_08399430_08416750
CI01000012_08423495_08432094.mRNA mRNA upstream 142516 8422804 ~ 8432094 (-) True CI01000012_08423495_08432094
CI01000012_08445692_08459897.mRNA mRNA upstream 165370 8445658 ~ 8459897 (-) True CI01000012_08445692_08459897
CI01000012_08489570_08491016.mRNA mRNA upstream 208810 8489098 ~ 8492326 (-) True CI01000012_08489570_08491016
TU85146 other downstream 14397 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 921506 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 2132557 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 2814194 5462840 ~ 5465857 (-) True G72294
TU82393 other downstream 2863271 5363642 ~ 5364079 (-) True G72235
TU85219 other upstream 86731 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 86793 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 86793 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 787618 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 791083 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410

Expression Profile