RNA id: TU85218


Basic Information

Item Value
RNA id TU85218
length 547
RNA type TUCP
GC content 0.48
exon number 1
gene id G74701
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8367019 ~ 8367643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAATGAAAGTCAGTCGTAGTAAGACTGAGTACATGTGTGTGAATGAAAGGGAGGGAAATGGAACAGTAAGATTACAGGGTGAAGAGGTGAAGAAGGTACAGGAGTTTAAGTACTTGGGCTCAACAGTCCAGAGTAATGGAGAGTGTGGGAAGGAGGTGAAGAAGCGAGTGCAGGCAGGTTGGAATGGGTGGAGAAAGGTGTCGGGAGTTCTGTGTGATAGGAAAATATCAGCGAGAATCAAGGGGATGGTGTACAAGACCGTGGTGAGACCTGCCATGCTGTATGGTTTAGAGACAGTGTCACTGAGGAAGAGACAGGAGTCAGAGTTGGAGGTAGCAGAGCTGAAGATGTTGAGGTTCTCTATGGGAGTGACAAGGTTGGACAGAATTAGGAACGAGTACATCAGAGGGACAGCTCATGTTGGACGTTTGGGGGACAAAGTTAGAGAGGCCAGATTAAGATGGTTTGCACATGTTCAGAGGAGGGAGAGTGAGTATATTGGTAGGAGAATGTTGGACATGGAGCTGCCAGGCAGGAGGCAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85215 lncRNA downstream 8307 8358548 ~ 8358774 (-) True G74698
TU85212 lncRNA downstream 9582 8356910 ~ 8357499 (-) True G74695
TU85211 lncRNA downstream 9696 8356790 ~ 8357385 (-) False G74695
TU85213 lncRNA downstream 10443 8356067 ~ 8356638 (-) True G74696
TU85201 lncRNA downstream 26756 8340104 ~ 8340325 (-) True G74687
TU85226 lncRNA upstream 841 8368468 ~ 8368999 (-) True G74702
TU85227 lncRNA upstream 1471 8369098 ~ 8369409 (-) True G74703
TU85264 lncRNA upstream 50595 8418222 ~ 8418686 (-) True G74733
TU85266 lncRNA upstream 106424 8474051 ~ 8474327 (-) True G74735
TU85279 lncRNA upstream 182469 8550096 ~ 8550368 (-) True G74748
CI01000012_08247043_08252830.mRNA mRNA downstream 114123 8246417 ~ 8252958 (-) True CI01000012_08247043_08252830
CI01000012_08156754_08159438.mRNA mRNA downstream 207643 8156069 ~ 8159438 (-) True CI01000012_08156754_08159438
CI01000012_07956050_07959414.mRNA mRNA downstream 407667 7955987 ~ 7959414 (-) True CI01000012_07956050_07959414
CI01000012_07938822_07940632.mRNA mRNA downstream 426036 7938814 ~ 7941045 (-) True CI01000012_07938822_07940632
CI01000012_07930029_07934648.mRNA mRNA downstream 432200 7929292 ~ 7934881 (-) True CI01000012_07930029_07934648
CI01000012_08376626_08388293.mRNA mRNA upstream 8991 8376618 ~ 8388293 (-) True CI01000012_08376626_08388293
CI01000012_08399430_08416750.mRNA mRNA upstream 30139 8397766 ~ 8417291 (-) True CI01000012_08399430_08416750
CI01000012_08423495_08432094.mRNA mRNA upstream 55177 8422804 ~ 8432094 (-) True CI01000012_08423495_08432094
CI01000012_08445692_08459897.mRNA mRNA upstream 78031 8445658 ~ 8459897 (-) True CI01000012_08445692_08459897
CI01000012_08489570_08491016.mRNA mRNA upstream 121471 8489098 ~ 8492326 (-) True CI01000012_08489570_08491016
TU85146 other downstream 101427 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1008536 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 2219587 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 2901224 5462840 ~ 5465857 (-) True G72294
TU82393 other downstream 2950301 5363642 ~ 5364079 (-) True G72235
TU85328 other upstream 700279 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 703744 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 715109 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 1030449 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 1208021 9575648 ~ 9575924 (-) False G74982

Expression Profile