RNA id: TU83932


Basic Information

Item Value
RNA id TU83932
length 233
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G73595
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8418186 ~ 8418418 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCTCATCGCTTTATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTTGGTAGCTTTCTGGGCATTGAATAAGGAAATGATATTGCTGGCAATGCAGGCCTCACTGAGCCATCAGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGCTGAGTAATAAATGACAGAATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83931 lncRNA upstream 4928 8412886 ~ 8413258 (+) True G73594
TU83930 lncRNA upstream 21450 8396404 ~ 8396736 (+) True G73593
TU83929 lncRNA upstream 22902 8395066 ~ 8395284 (+) True G73592
TU83928 lncRNA upstream 24374 8393581 ~ 8393812 (+) True G73591
TU83922 lncRNA upstream 26376 8386287 ~ 8391810 (+) True G73585
TU83959 lncRNA downstream 2299 8420717 ~ 8421576 (+) True G73611
TU83955 lncRNA downstream 54122 8472540 ~ 8473285 (+) True G73607
TU83985 lncRNA downstream 77628 8496046 ~ 8496340 (+) True G73637
TU83990 lncRNA downstream 83931 8502349 ~ 8502561 (+) True G73642
TU83991 lncRNA downstream 84310 8502728 ~ 8502951 (+) True G73643
CI01000012_08353036_08355661.mRNA mRNA upstream 60771 8350829 ~ 8357415 (+) False CI01000012_08353036_08355661
CI01000012_08312903_08334243.mRNA mRNA upstream 83330 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
CI01000012_08307719_08308987.mRNA mRNA upstream 108965 8307719 ~ 8309221 (+) True CI01000012_08307719_08308987
CI01000012_08264407_08270366.mRNA mRNA upstream 147358 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08234924_08239665.mRNA mRNA upstream 178301 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08433577_08437269.mRNA mRNA downstream 15159 8433577 ~ 8437972 (+) True CI01000012_08433577_08437269
CI01000012_08464015_08470633.mRNA mRNA downstream 45597 8464015 ~ 8470764 (+) True CI01000012_08464015_08470633
CI01000012_08479030_08480715.mRNA mRNA downstream 58698 8477116 ~ 8481200 (+) True CI01000012_08479030_08480715
CI01000012_08526824_08531821.mRNA mRNA downstream 108406 8526824 ~ 8532163 (+) True CI01000012_08526824_08531821
CI01000012_08574591_08601981.mRNA mRNA downstream 156173 8574591 ~ 8601998 (+) True CI01000012_08574591_08601981
TU83914 other upstream 50559 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 50559 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 50559 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 610331 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2493881 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 1803537 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2726399 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 4212337 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 4327113 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4597088 13015506 ~ 13023794 (+) True G76462

Expression Profile