RNA id: TU84027



Basic Information


Item Value
RNA id TU84027
length 218
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G73671
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8560372 ~ 8560589 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTATATGTCTCGGGTGGTGCTGATATCATTGTTGCCGGCATAAAGCTCGAATAAGGACCGTGACCTCTGGAGTCCATGCAGAGAAGAGATGATGTTGTTCTCGACAGACAGGAAGTGAAGGTTGGGTAGCCGGTCTAATACATCCCCGTCTAAACACTGTAGGTGGTTGCTGTTAATGCTCAGACGCGTCAGACGATGCATCGCACACAAACCTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84024 lncRNA upstream 10351 8549747 ~ 8550021 (+) True G73668
TU83941 lncRNA upstream 41752 8514685 ~ 8518620 (+) False G73600
TU84045 lncRNA downstream 88015 8648604 ~ 8648837 (+) True G73684
TU84047 lncRNA downstream 90620 8651209 ~ 8651450 (+) True G73686
TU84062 lncRNA downstream 139622 8700211 ~ 8700508 (+) True G73701
TU84119 lncRNA downstream 184548 8745137 ~ 8746477 (+) False G73743
TU84121 lncRNA downstream 184548 8745137 ~ 8746687 (+) False G73743
CI01000012_08526824_08531821.mRNA mRNA upstream 28209 8526824 ~ 8532163 (+) True CI01000012_08526824_08531821
CI01000012_08479030_08480715.mRNA mRNA upstream 79172 8477116 ~ 8481200 (+) True CI01000012_08479030_08480715
CI01000012_08464015_08470633.mRNA mRNA upstream 89608 8464015 ~ 8470764 (+) True CI01000012_08464015_08470633
CI01000012_08433577_08437269.mRNA mRNA upstream 122400 8433577 ~ 8437972 (+) True CI01000012_08433577_08437269
CI01000012_08353036_08355661.mRNA mRNA upstream 202957 8350829 ~ 8357415 (+) False CI01000012_08353036_08355661
CI01000012_08574591_08601981.mRNA mRNA downstream 14002 8574591 ~ 8601998 (+) True CI01000012_08574591_08601981
CI01000012_08629488_08631884.mRNA mRNA downstream 68629 8629218 ~ 8631999 (+) True CI01000012_08629488_08631884
CI01000012_08635778_08639992.mRNA mRNA downstream 75189 8635778 ~ 8640568 (+) True CI01000012_08635778_08639992
CI01000012_08643992_08646512.mRNA mRNA downstream 83403 8643992 ~ 8646542 (+) True CI01000012_08643992_08646512
CI01000012_08656797_08670009.mRNA mRNA downstream 95734 8656323 ~ 8670242 (+) True CI01000012_08656797_08670009
TU83914 other upstream 192745 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 192745 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 192745 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 752517 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2636067 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 1661366 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2584228 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 4070166 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 4184942 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4454917 13015506 ~ 13023794 (+) True G76462

Expression Profile