RNA id: TU84045


Basic Information

Item Value
RNA id TU84045
length 234
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G73684
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8648604 ~ 8648837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAATTCCACAAACAGCATTACAGCTTCACATATTACTAAGCAGATTGACTTTATTTCTGTCATTCATCTACAGAAGTTCTTATTGAGAATTATCAAAAGTTTAAGGCTCATGTTTGTTTCATTTAAAGTCACCATAATGGTGATTGGTTATTCCATTAGTTGGGCTCTTAACTCTTATAATATGTTCATCTTCTCTAGCTGCTGTAACAGTGTGTTTGTCTACGGAGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84027 lncRNA upstream 88015 8560372 ~ 8560589 (+) True G73671
TU84024 lncRNA upstream 98583 8549747 ~ 8550021 (+) True G73668
TU83942 lncRNA upstream 129984 8514685 ~ 8518620 (+) False G73600
TU84047 lncRNA downstream 2372 8651209 ~ 8651450 (+) True G73686
TU84062 lncRNA downstream 51374 8700211 ~ 8700508 (+) True G73701
TU84119 lncRNA downstream 96300 8745137 ~ 8746477 (+) False G73743
TU84121 lncRNA downstream 96300 8745137 ~ 8746687 (+) False G73743
TU84122 lncRNA downstream 96300 8745137 ~ 8746594 (+) True G73743
CI01000012_08643992_08646512.mRNA mRNA upstream 2062 8643992 ~ 8646542 (+) True CI01000012_08643992_08646512
CI01000012_08635778_08639992.mRNA mRNA upstream 8036 8635778 ~ 8640568 (+) True CI01000012_08635778_08639992
CI01000012_08629488_08631884.mRNA mRNA upstream 16605 8629218 ~ 8631999 (+) True CI01000012_08629488_08631884
CI01000012_08574591_08601981.mRNA mRNA upstream 46606 8574591 ~ 8601998 (+) True CI01000012_08574591_08601981
CI01000012_08526824_08531821.mRNA mRNA upstream 116441 8526824 ~ 8532163 (+) True CI01000012_08526824_08531821
CI01000012_08656797_08670009.mRNA mRNA downstream 7486 8656323 ~ 8670242 (+) True CI01000012_08656797_08670009
CI01000012_08706061_08708565.mRNA mRNA downstream 57079 8705916 ~ 8709256 (+) True CI01000012_08706061_08708565
CI01000012_08787836_08798682.mRNA mRNA downstream 138999 8787836 ~ 8798682 (+) True CI01000012_08787836_08798682
CI01000012_08852654_08899169.mRNA mRNA downstream 203817 8852654 ~ 8899169 (+) True CI01000012_08852654_08899169
CI01000012_08926039_08935452.mRNA mRNA downstream 276211 8925048 ~ 8935861 (+) True CI01000012_08926039_08935452
TU83914 other upstream 280977 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 280977 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 280977 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 840749 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2724299 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 1573118 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2495980 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 3981918 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 4096694 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4366669 13015506 ~ 13023794 (+) True G76462

Expression Profile