RNA id: TU84121



Basic Information


Item Value
RNA id TU84121
length 1551
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G73743
representative False

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8745137 ~ 8746687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATTTCTGATACATATCATAACTATATAGCTTATAATTGAGCTTTCCATCAAAGTACAAGGTTTATAGTGTAATACAGCAATATAGCAGTTTATTCATGTTTTCACAAAGCTCGTGGAAAATTAATGCAAATAAATATACAACTATAAATCAAATGGGACTATTTACCCCTTTTAAAAGCTCTGATGTGCTCATACTCTATAATAAACTCAGTTTAAGACATTAGTGTGCTGCAAAATTATTGTGCTGTTGCTTTGCATCAAGCTAAACAGTGAGAAACAGTTCTACAGTATCACAGAATATTGGTCCATTGCCATTTCCAACCCATTCACACATTTGTTGCTTAATATTGTGAGTCTGATGTCTTAAGATGGTTTACTGCAAGCGTTCTTTCTCCATTACAAGTGTAAGCAGATACTTGCTCTGCTGTCCAAAGTCAAATAATGGTTTCCAAGCGATTATGCCTGCTGGCAGACCCTCAGAAGCTATACATACAGATAAGAAGGCTGTGGTTTGTAATCTCTTAGCATCAGTCCTATTTCTTTGGGTTAATTTCTCCTGCTCTGACCTAATGTCAACTAAGAGGTAAAACAGCTTGTTTTATTTAAGAAGAGTGCAGATAAAGAAAGATGAGCGGTAGACTGCCCACATGTAGAGAAATTAAAAGGCACTTTGCTAAAAGTATCTGTCTAGCAGCTGGTTCTTCTGAGAGTGTAAAAATCTTTTCGAATGAAGATGACCTCTCTCGCAGCTACTAAAATCAGACACTCCAACACTGTCAAATCAAAACAATGCAATTCTGTAAGAAAAAAAAAATCAGAAAATTTGACATAGTTTGGATAAGTATTCAAAACATACATTTTGTGTAATGGTTTGATGCTGATTGGTACATTCTTCAAAATGTGAGAAATCAGTTTGAATTAACTAATGTGCATAATTTTTATCTTAAAGAAACTAAAACATGTTCAAGGCAAAATGACTAAAAGTCCAGAAAGGCTATGAAATCAGTGTTTTTAAGCCAAAATGGTACAAAAATATATATCAGATCACACAAGGACATTGCACAGTTAATGAAAATATCTACCGTATTTCCTATGATATATTCCATTTTCGATAAATAGAACTAGTGGTCGTACTATATCAGACACACACGATCAACACATCACCATGTCTGCCACTCAAAAACACACATATTGTTGCTTTTCTGAGGAAACACTTGTAAGATTTTAAGGACTGTAAGGATGCATTAATGAAGAGGTTTCGGTTTGCCAGTGGTGACCGTGAAGAAGTGAGATGCTTTGTAACACCTCCAGCCAGACTTTGTAACAAAAGAGGTATTGTTCCTGAAATCAGAGAGAAGAATGGCAAAACATCTCCAGATAGTTTATTCAACTATACTGTACATTCAGAAGAAGGGTAATGCAAAAAAATAAACAGAAGACAAGTATTGCATTCTTCTTAATTAGCAGCTGATTAAATAAATGAAAGCTATCTAAGACCAGCTCATGATTGACAGGTTTTTTTGTTCATGGGCTGAAAGATCATGTGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84062 lncRNA upstream 44629 8700211 ~ 8700508 (+) True G73701
TU84047 lncRNA upstream 93687 8651209 ~ 8651450 (+) True G73686
TU84045 lncRNA upstream 96300 8648604 ~ 8648837 (+) True G73684
TU84027 lncRNA upstream 184548 8560372 ~ 8560589 (+) True G73671
TU84024 lncRNA upstream 195116 8549747 ~ 8550021 (+) True G73668
TU84126 lncRNA downstream 1955 8748642 ~ 8748993 (+) False G73744
TU84124 lncRNA downstream 2050 8748737 ~ 8749055 (+) False G73744
TU84125 lncRNA downstream 2050 8748737 ~ 8748993 (+) True G73744
TU84133 lncRNA downstream 9435 8756122 ~ 8756791 (+) True G73750
TU84135 lncRNA downstream 12884 8759571 ~ 8759914 (+) True G73752
CI01000012_08706061_08708565.mRNA mRNA upstream 35881 8705916 ~ 8709256 (+) True CI01000012_08706061_08708565
CI01000012_08656797_08670009.mRNA mRNA upstream 74895 8656323 ~ 8670242 (+) True CI01000012_08656797_08670009
CI01000012_08643992_08646512.mRNA mRNA upstream 98595 8643992 ~ 8646542 (+) True CI01000012_08643992_08646512
CI01000012_08635778_08639992.mRNA mRNA upstream 104569 8635778 ~ 8640568 (+) True CI01000012_08635778_08639992
CI01000012_08629488_08631884.mRNA mRNA upstream 113138 8629218 ~ 8631999 (+) True CI01000012_08629488_08631884
CI01000012_08787836_08798682.mRNA mRNA downstream 41149 8787836 ~ 8798682 (+) True CI01000012_08787836_08798682
CI01000012_08852654_08899169.mRNA mRNA downstream 105967 8852654 ~ 8899169 (+) True CI01000012_08852654_08899169
CI01000012_08926039_08935452.mRNA mRNA downstream 178361 8925048 ~ 8935861 (+) True CI01000012_08926039_08935452
CI01000012_09059209_09062816.mRNA mRNA downstream 312522 9059209 ~ 9062938 (+) True CI01000012_09059209_09062816
CI01000012_09074304_09074584.mRNA mRNA downstream 326859 9073546 ~ 9074642 (+) True CI01000012_09074304_09074584
TU83914 other upstream 377510 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 377510 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 377510 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 937282 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2820832 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 1475268 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2398130 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 3884068 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 3998844 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4268819 13015506 ~ 13023794 (+) True G76462

Expression Profile