RNA id: TU85426


Basic Information

Item Value
RNA id TU85426
length 290
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G74887
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8994610 ~ 8994899 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAAGTCGTCATAGTTGGGTAAAATTCTATAGCGGTGAATGAGAGAATACATTAAGTATATTTTTTGTTTCCATTTGCTCAAATAACAAAGGAAAAACTCCACAATAGTGTTTTCACAACTTTCAAAAAGAGAAAAAAAATAGAGAGCGATAGATAACGGCAGTCAGAAGAGAGAAAGATGTTATTTTTACCGTCACTCCCATAGCTGCTGTATTAGAAACGCTCACAGCAGCGTTAATTAGATTTTTGTAATTTGATGCAAAGGTAAGATAATACCGTTAGTATAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85424 lncRNA downstream 1190 8993221 ~ 8993420 (-) True G74885
TU85421 lncRNA downstream 3364 8991038 ~ 8991246 (-) True G74882
TU85342 lncRNA downstream 130087 8862377 ~ 8864523 (-) True G74808
TU85350 lncRNA downstream 141605 8851072 ~ 8853005 (-) True G74816
TU85404 lncRNA downstream 154430 8839790 ~ 8840180 (-) True G74867
TU85326 lncRNA upstream 3927 9006633 ~ 9006790 (-) True G74792
TU85460 lncRNA upstream 345301 9340200 ~ 9340405 (-) True G74921
TU85358 lncRNA upstream 479405 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 492368 9487267 ~ 9487594 (-) True G74953
TU85496 lncRNA upstream 492971 9487870 ~ 9488107 (-) True G74954
CI01000012_08947834_08963715.mRNA mRNA downstream 30798 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_08940340_08945093.mRNA mRNA downstream 49186 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_08908244_08917212.mRNA mRNA downstream 77014 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08841980_08849453.mRNA mRNA downstream 145053 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08805894_08831322.mRNA mRNA downstream 163288 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_09001061_09005079.mRNA mRNA upstream 5794 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_09068458_09070536.mRNA mRNA upstream 73471 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
CI01000012_09071892_09073410.mRNA mRNA upstream 76592 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09082056_09083285.mRNA mRNA upstream 86978 9081877 ~ 9083483 (-) False CI01000012_09082056_09083285
CI01000012_09164233_09178383.mRNA mRNA upstream 169202 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
TU85225 other downstream 626967 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 626983 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 626983 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 728956 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1636065 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 73007 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 76472 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 87837 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 403177 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 580749 9575648 ~ 9575924 (-) False G74982

Expression Profile