RNA id: TU85460


Basic Information

Item Value
RNA id TU85460
length 206
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G74921
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9340200 ~ 9340405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATTGGCCACTAAGGTGGCTAATTTGTATACAAAAACATCTAAGAGAAAACTTCCACTTGTCTTGAGTTTTGACAAAAGTACAACAGAACTGAATTATGACAAAAGTGCACCTTGTACATTCTTAATGGATCTGAAATGTATGCATGATTTAGTGCCTGCAGGCATTACTATTTCAGGCACAACAACTGACGCTTGGACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85326 lncRNA downstream 333410 9006633 ~ 9006790 (-) True G74792
TU85426 lncRNA downstream 345301 8994610 ~ 8994899 (-) True G74887
TU85424 lncRNA downstream 346780 8993221 ~ 8993420 (-) True G74885
TU85421 lncRNA downstream 348954 8991038 ~ 8991246 (-) True G74882
TU85342 lncRNA downstream 475677 8862377 ~ 8864523 (-) True G74808
TU85358 lncRNA upstream 133899 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 146862 9487267 ~ 9487594 (-) True G74953
TU85496 lncRNA upstream 147465 9487870 ~ 9488107 (-) True G74954
TU85499 lncRNA upstream 149997 9490402 ~ 9490617 (-) True G74957
TU85497 lncRNA upstream 152647 9493052 ~ 9493918 (-) True G74955
CI01000012_09306970_09313413.mRNA mRNA downstream 24487 9306591 ~ 9315713 (-) True CI01000012_09306970_09313413
CI01000012_09164233_09178383.mRNA mRNA downstream 160932 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
CI01000012_09082056_09083285.mRNA mRNA downstream 256717 9081877 ~ 9083483 (-) False CI01000012_09082056_09083285
CI01000012_09071892_09073410.mRNA mRNA downstream 266775 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09068458_09070536.mRNA mRNA downstream 269435 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
CI01000012_09358336_09370502.mRNA mRNA upstream 17693 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
CI01000012_09379379_09394499.mRNA mRNA upstream 38746 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09400481_09401810.mRNA mRNA upstream 59939 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09419200_09460604.mRNA mRNA upstream 78690 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09465977_09473475.mRNA mRNA upstream 125543 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
TU85337 other downstream 256711 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 266743 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 269533 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 972557 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 972573 8367019 ~ 8367627 (-) False G74701
TU85327 other upstream 57671 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 235243 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 235243 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1271510 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1271510 10611915 ~ 10620871 (-) True G75608

Expression Profile