RNA id: TU85496


Basic Information

Item Value
RNA id TU85496
length 238
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G74954
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9487870 ~ 9488107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGAAACATAACAGAAAACCAATCAGTTGAAGTGTCTGTTCCACCTCGATTTTTTTTTAATCCAGAGATATAAACGGTCGATAAATACACTTATAGGTTAAATTAATTAGAATCACCCGCCCAAAAGAAGATAAAACGCGGAACTCACCAACTGCAGCAAGACTTCATGTGAGCCATCAGGATGAAAGCGTAATAATAAAACTCCAAATGCATGAACATCCTGAGAGAGAGGACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85495 lncRNA downstream 276 9487267 ~ 9487594 (-) True G74953
TU85358 lncRNA downstream 11876 9474304 ~ 9475994 (-) True G74824
TU85460 lncRNA downstream 147465 9340200 ~ 9340405 (-) True G74921
TU85326 lncRNA downstream 481080 9006633 ~ 9006790 (-) True G74792
TU85426 lncRNA downstream 492971 8994610 ~ 8994899 (-) True G74887
TU85499 lncRNA upstream 2295 9490402 ~ 9490617 (-) True G74957
TU85497 lncRNA upstream 4945 9493052 ~ 9493918 (-) True G74955
TU85511 lncRNA upstream 48979 9537086 ~ 9537398 (-) True G74968
TU85512 lncRNA upstream 49293 9537400 ~ 9537606 (-) True G74969
TU85514 lncRNA upstream 52329 9540436 ~ 9540649 (-) True G74971
CI01000012_09465977_09473475.mRNA mRNA downstream 14395 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 26582 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 85492 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 92820 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09358336_09370502.mRNA mRNA downstream 117250 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
CI01000012_09513757_09517777.mRNA mRNA upstream 25161 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09589749_09615649.mRNA mRNA upstream 100337 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 266488 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 294503 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 299588 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
TU85327 other downstream 85902 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 404381 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 414413 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 417203 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1120227 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 87541 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 87541 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1123808 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1123808 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2560937 12049044 ~ 12049222 (-) True G76984

Expression Profile