RNA id: TU85511


Basic Information

Item Value
RNA id TU85511
length 313
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G74968
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9537086 ~ 9537398 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAACACACTGACTCTATCACAATGAGGAGGAGGGCCGAATGGGGATTTCTCTGTTTGAGAGGAACAGATCCAGACTATCCGTCCTCCGGTCTAACAGCGTCTGCCCAGTTTGGGGAAAGCATGGCCTCAACTGGTCAAACACAGGCAATGCAGTTCCTTAAACAATCCCCTCTAAAGCATTTCAATTTGTATCAAGCTATATTTATGCCTAAACATTATTTCAAATTTCACTGAAAGATTTTTACAGTACACCTTGGTTTGTTTACTGAAAATTAAAAGAAAAAAATATTTTGACACATTTGAAATAAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85497 lncRNA downstream 43168 9493052 ~ 9493918 (-) True G74955
TU85499 lncRNA downstream 46469 9490402 ~ 9490617 (-) True G74957
TU85496 lncRNA downstream 48979 9487870 ~ 9488107 (-) True G74954
TU85495 lncRNA downstream 49492 9487267 ~ 9487594 (-) True G74953
TU85358 lncRNA downstream 61092 9474304 ~ 9475994 (-) True G74824
TU85512 lncRNA upstream 2 9537400 ~ 9537606 (-) True G74969
TU85514 lncRNA upstream 3038 9540436 ~ 9540649 (-) True G74971
TU85516 lncRNA upstream 6561 9543959 ~ 9544196 (-) True G74973
TU85519 lncRNA upstream 17901 9555299 ~ 9555531 (-) True G74976
TU85524 lncRNA upstream 34824 9572222 ~ 9572435 (-) True G74981
CI01000012_09513757_09517777.mRNA mRNA downstream 19309 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 63611 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 75798 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 134708 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 142036 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09589749_09615649.mRNA mRNA upstream 51046 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 217197 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 245212 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 250297 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 292767 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
TU85327 other downstream 135118 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 453597 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 463629 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 466419 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1169443 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 38250 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 38250 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1074517 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1074517 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2511646 12049044 ~ 12049222 (-) True G76984

Expression Profile