RNA id: TU85514


Basic Information

Item Value
RNA id TU85514
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G74971
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9540436 ~ 9540649 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAAGGCAATTAGCAGCGTTCTTCCTGAGGACTTTGCTTTACCCCTAACCTTTACACAACAGTTTATGTCAAAGGATTTGTCACCTCCACTGTGAGGCCGTCTTGGCTTTTCAAAAATACATAATAGGAGGAAAGAAAGGGGGAAAAAACTCTTCCAAGCCTCCGCTGAGGATTTGGGCACTTATATAACTCCCAATTATCAAAACTTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85512 lncRNA downstream 2830 9537400 ~ 9537606 (-) True G74969
TU85511 lncRNA downstream 3038 9537086 ~ 9537398 (-) True G74968
TU85497 lncRNA downstream 46518 9493052 ~ 9493918 (-) True G74955
TU85499 lncRNA downstream 49819 9490402 ~ 9490617 (-) True G74957
TU85496 lncRNA downstream 52329 9487870 ~ 9488107 (-) True G74954
TU85516 lncRNA upstream 3310 9543959 ~ 9544196 (-) True G74973
TU85519 lncRNA upstream 14650 9555299 ~ 9555531 (-) True G74976
TU85524 lncRNA upstream 31573 9572222 ~ 9572435 (-) True G74981
TU85526 lncRNA upstream 34999 9575648 ~ 9576149 (-) False G74982
TU85527 lncRNA upstream 35046 9575695 ~ 9575972 (-) True G74982
CI01000012_09513757_09517777.mRNA mRNA downstream 22659 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 66961 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 79148 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 138058 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 145386 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09589749_09615649.mRNA mRNA upstream 47795 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 213946 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 241961 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 247046 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 289516 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
TU85327 other downstream 138468 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 456947 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 466979 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 469769 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1172793 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 34999 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 34999 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1071266 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1071266 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2508395 12049044 ~ 12049222 (-) True G76984

Expression Profile