RNA id: TU85527


Basic Information

Item Value
RNA id TU85527
length 278
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G74982
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9575648 ~ 9576149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGAGATACCGTGACGAGATCCTGAGGCCCATTGTTGTGCCATTCATCCACGACCATCACCTCATGTTGCAGCATGATAATGCATGGCCCCATGTTGCAAGGATCTGTACACAATTCCTGGAAGCTGAAAACATCCCAGTTCTTGCATGGCCAGCATACTCACTGGACATGTCACCCATTGAGCATGTTTGGGATGCTCTGGATCGGCGTATACGACAGCGTGTTCCAGTTCCTGCCAATATCCAGCAACTTCGCACAGCCATTGAAGAGGAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85524 lncRNA downstream 3260 9572222 ~ 9572435 (-) True G74981
TU85519 lncRNA downstream 20164 9555299 ~ 9555531 (-) True G74976
TU85516 lncRNA downstream 31499 9543959 ~ 9544196 (-) True G74973
TU85514 lncRNA downstream 35046 9540436 ~ 9540649 (-) True G74971
TU85512 lncRNA downstream 38089 9537400 ~ 9537606 (-) True G74969
TU85534 lncRNA upstream 8902 9584874 ~ 9585170 (-) True G74986
TU85547 lncRNA upstream 55267 9631239 ~ 9631450 (-) True G74994
TU85549 lncRNA upstream 60175 9636147 ~ 9636398 (-) True G74996
TU85550 lncRNA upstream 60933 9636905 ~ 9637144 (-) True G74997
TU85554 lncRNA upstream 63474 9639446 ~ 9639649 (-) True G75001
CI01000012_09513757_09517777.mRNA mRNA downstream 57918 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 102220 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 114407 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 173317 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 180645 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09589749_09615649.mRNA mRNA upstream 12472 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 178623 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 206638 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 211723 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 254193 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
TU85327 other downstream 173727 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 492206 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 502238 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 505028 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1208052 8367081 ~ 8367643 (-) True G74701
TU86281 other upstream 1035943 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1035943 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2473072 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2502964 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2502964 12080546 ~ 12083845 (-) True G77017

Expression Profile