RNA id: TU85534


Basic Information

Item Value
RNA id TU85534
length 297
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G74986
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9584874 ~ 9585170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTGAGGCTTGAATGGGGAGAAAACGGCATCATCTGTCATGGGGTGTCACACTGGAGAGAGAAGGAGCACCAGAGGAGTTGCACTGGACAGCACTCACTGTTAAGTCCTGTCAGCCGTCTATGTGCTCGTCATCATCACTGCTGTCATATTTGATGCTGGGGAGGGGAAAGGCCAACCTGGGGCTGTCAATCAAATCCACCTCATTAGGGACACCGCTAATTATGAAATTTTCTACGATGTCTGGGAATGGACTATTTCTTAGGTACTGTATATCATCAAGACAGTGTAGTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85526 lncRNA downstream 8725 9575648 ~ 9576149 (-) False G74982
TU85527 lncRNA downstream 8902 9575695 ~ 9575972 (-) True G74982
TU85524 lncRNA downstream 12439 9572222 ~ 9572435 (-) True G74981
TU85519 lncRNA downstream 29343 9555299 ~ 9555531 (-) True G74976
TU85516 lncRNA downstream 40678 9543959 ~ 9544196 (-) True G74973
TU85547 lncRNA upstream 46069 9631239 ~ 9631450 (-) True G74994
TU85549 lncRNA upstream 50977 9636147 ~ 9636398 (-) True G74996
TU85550 lncRNA upstream 51735 9636905 ~ 9637144 (-) True G74997
TU85554 lncRNA upstream 54276 9639446 ~ 9639649 (-) True G75001
TU85557 lncRNA upstream 56540 9641710 ~ 9641944 (-) True G75004
CI01000012_09513757_09517777.mRNA mRNA downstream 67097 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 111399 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 123586 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 182496 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 189824 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09589749_09615649.mRNA mRNA upstream 3274 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 169425 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 197440 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 202525 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 244995 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
TU85530 other downstream 8902 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 8950 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 182906 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 501385 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 511417 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 1026745 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1026745 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2463874 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2493766 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2493766 12080546 ~ 12083845 (-) True G77017

Expression Profile