RNA id: TU85789


Basic Information

Item Value
RNA id TU85789
length 643
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G75212
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9815978 ~ 9817036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAATGTGCCTTGCTTACAGCAAAGTCACATTTTTTCTTAGTGCAGTCCTTACCCAATTGGCCTTAAGATCGCTTCTCTCCAGTAACTTTTTCTGAAGAAATTCTCCCATTCCACCAGGTACTCCAAATTTCTCTACAATAGCCTTTGTCTTTCTGAACTGCTCCTCTGGTATGAGGTGACTCATGCACTTCAGGTACATGTCCAGTGTTTGCTGCAAAGGGGGCACTGGGAGCTTCGGAAGGCCACTTGGATCTCCCGTGTCTCTTGCTTGTTCCCTTTTCAAAACCGGCATCCTCAAAGTTATAGAATTCAGTGAAGAAAGATGAAAATCCACTCACTGACACTTTTCCCAGTTCCCTCTGGAACAGATATACAGGTATGAGAGAAAGCTTGCATTGCAAATAGTTTTCAATATCCAATTTTTGTTTGTTTTTTTATCAGCCACACTAGACAAGGCTATTAGCAACCTTAAAATATTCAAAATTAAATGTGAATTTTAATATTAAATACATTCCTCATGGATGTAAATGAAGTAGAAAGTCTTTTTACATAGCTTTTTAGCTCCATTTGGTACTTGTTTGAGGAGGAGGCATATTAAAAAATAAACGTTCTTCTACATTCTTAAAAGTGTCAATTTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85765 lncRNA downstream 46469 9766445 ~ 9769509 (-) True G75189
TU85557 lncRNA downstream 174034 9641710 ~ 9641944 (-) True G75004
TU85554 lncRNA downstream 176329 9639446 ~ 9639649 (-) True G75001
TU85550 lncRNA downstream 178834 9636905 ~ 9637144 (-) True G74997
TU85549 lncRNA downstream 179580 9636147 ~ 9636398 (-) True G74996
TU85809 lncRNA upstream 170329 9987365 ~ 9987685 (-) True G75230
TU86324 lncRNA upstream 268915 10085951 ~ 10086261 (-) True G75645
TU86325 lncRNA upstream 269239 10086275 ~ 10086512 (-) True G75646
TU86326 lncRNA upstream 272020 10089056 ~ 10089273 (-) True G75647
TU86327 lncRNA upstream 272969 10090005 ~ 10090218 (-) True G75648
CI01000012_09789066_09792437.mRNA mRNA downstream 23541 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09782840_09786910.mRNA mRNA downstream 29068 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09754856_09756772.mRNA mRNA downstream 59022 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09589749_09615649.mRNA mRNA downstream 200329 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09513757_09517777.mRNA mRNA downstream 298201 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09830411_09851586.mRNA mRNA upstream 13129 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
CI01000012_09862141_09892366.mRNA mRNA upstream 44839 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
CI01000012_09894361_09922003.mRNA mRNA upstream 76620 9893656 ~ 9922443 (-) True CI01000012_09894361_09922003
CI01000012_09926268_09941904.mRNA mRNA upstream 109037 9926073 ~ 9942394 (-) True CI01000012_09926268_09941904
CI01000012_09974294_09974754.mRNA mRNA upstream 156303 9973339 ~ 9975056 (-) True CI01000012_09974294_09974754
TU85530 other downstream 240006 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 240054 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 414010 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 732489 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 742521 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 794879 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 794879 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2232008 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2261900 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2261900 12080546 ~ 12083845 (-) True G77017

Expression Profile