RNA id: TU85648


Basic Information

Item Value
RNA id TU85648
length 276
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G75089
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9859679 ~ 9859954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGGTTAAACAGTAATTAACAGAAACGTATATATAACTCGCAACCACTGTTTAAAATTCAATTAAATATTTATAAAAATGACTTCAAATTAAGTTGTGCCAGGGTGTAATGAGAACATTGATATTTTCAGTAACCTCTGATCCTTAATCACATCGGACAATTACGCTTTCCTAATTTTCGTAGGGATTGTGCAGAATTCACTTGAACGTGGTTTCAGTCATCTAGATTGATGGTCTTTATGTTGGCGGATTTTACAGTCTGAGCTAATTGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85646 lncRNA upstream 1161 9858290 ~ 9858518 (+) True G75087
TU85608 lncRNA upstream 117431 9741467 ~ 9742248 (+) True G75055
TU84423 lncRNA upstream 228872 9616330 ~ 9630807 (+) True G74017
TU84420 lncRNA upstream 243590 9612580 ~ 9616089 (+) True G74014
TU84456 lncRNA upstream 283672 9575594 ~ 9576007 (+) True G74045
TU85676 lncRNA downstream 61419 9921373 ~ 9922152 (+) True G75113
TU85681 lncRNA downstream 71580 9931534 ~ 9931876 (+) True G75115
TU85713 lncRNA downstream 126158 9986112 ~ 9986370 (+) True G75147
TU85714 lncRNA downstream 127411 9987365 ~ 9987724 (+) True G75148
TU85837 lncRNA downstream 203428 10063382 ~ 10063692 (+) True G75258
CI01000012_09828421_09828926.mRNA mRNA upstream 30291 9828421 ~ 9829388 (+) True CI01000012_09828421_09828926
CI01000012_09815706_09822346.mRNA mRNA upstream 37008 9815706 ~ 9822671 (+) True CI01000012_09815706_09822346
CI01000012_09812937_09814478.mRNA mRNA upstream 44262 9812421 ~ 9815417 (+) True CI01000012_09812937_09814478
CI01000012_09796386_09801947.mRNA mRNA upstream 57135 9796291 ~ 9802544 (+) True CI01000012_09796386_09801947
CI01000012_09764936_09778598.mRNA mRNA upstream 80278 9764582 ~ 9779401 (+) True CI01000012_09764936_09778598
CI01000012_09977219_09983804.mRNA mRNA downstream 117057 9977011 ~ 9983866 (+) True CI01000012_09977219_09983804
CI01000012_10196272_10198737.mRNA mRNA downstream 336318 10196272 ~ 10198816 (+) True CI01000012_10196272_10198737
CI01000012_10223957_10235955.mRNA mRNA downstream 363743 10223697 ~ 10236276 (+) False CI01000012_10223957_10235955
CI01000012_10244843_10249396.mRNA mRNA downstream 384889 10244843 ~ 10249499 (+) True CI01000012_10244843_10249396
CI01000012_10260457_10272063.mRNA mRNA downstream 399781 10259735 ~ 10272262 (+) True CI01000012_10260457_10272063
TU83914 other upstream 1492052 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 1492052 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 1492052 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 2051824 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 3935374 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 362001 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 1284863 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 2770801 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 2885577 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 3155552 13015506 ~ 13023794 (+) True G76462

Expression Profile