RNA id: TU86340


Basic Information

Item Value
RNA id TU86340
length 243
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G75661
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10253120 ~ 10253362 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTGTGATGGCAAAGCTGAATTTACAGCATCATTATTAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTAGTGCTAAAGTAACATTTCTTATCATTATCAATTTTGAAAACAGTTGTGCTGCATATTTCTACAAAATCCATGATTCATTTTTTTCCTGTTTTCTTTGATGAATACAAAGTGAAACAGAATTTATGTGTAATCAAAATCTTTTGCAACATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86309 lncRNA downstream 73290 10179129 ~ 10179830 (-) True G75630
TU86327 lncRNA downstream 162902 10090005 ~ 10090218 (-) True G75648
TU86326 lncRNA downstream 163847 10089056 ~ 10089273 (-) True G75647
TU86325 lncRNA downstream 166608 10086275 ~ 10086512 (-) True G75646
TU86324 lncRNA downstream 166859 10085951 ~ 10086261 (-) True G75645
TU86232 lncRNA upstream 40484 10293846 ~ 10295724 (-) False G75597
TU86230 lncRNA upstream 40797 10294159 ~ 10295667 (-) False G75597
TU86231 lncRNA upstream 40797 10294159 ~ 10295724 (-) True G75597
TU86348 lncRNA upstream 96744 10350106 ~ 10350365 (-) True G75669
TU86352 lncRNA upstream 100574 10353936 ~ 10354138 (-) True G75673
CI01000012_10240747_10243942.mRNA mRNA downstream 9178 10240435 ~ 10243942 (-) True CI01000012_10240747_10243942
CI01000012_10217709_10222035.mRNA mRNA downstream 31085 10217208 ~ 10222035 (-) True CI01000012_10217709_10222035
CI01000012_10201667_10213604.mRNA mRNA downstream 39516 10201397 ~ 10213604 (-) True CI01000012_10201667_10213604
CI01000012_10189922_10194006.mRNA mRNA downstream 59114 10189876 ~ 10194006 (-) True CI01000012_10189922_10194006
CI01000012_10119912_10169990.mRNA mRNA downstream 83130 10119912 ~ 10169990 (-) True CI01000012_10119912_10169990
CI01000012_10255038_10257789.mRNA mRNA upstream 1538 10254900 ~ 10257802 (-) True CI01000012_10255038_10257789
CI01000012_10276814_10291389.mRNA mRNA upstream 22897 10276259 ~ 10292203 (-) True CI01000012_10276814_10291389
CI01000012_10303346_10315263.mRNA mRNA upstream 49801 10303163 ~ 10315900 (-) True CI01000012_10303346_10315263
CI01000012_10322141_10348992.mRNA mRNA upstream 68779 10322141 ~ 10348992 (-) True CI01000012_10322141_10348992
CI01000012_10358145_10364166.mRNA mRNA upstream 103994 10357356 ~ 10364166 (-) False CI01000012_10358145_10364166
TU85530 other downstream 677148 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 677196 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 851152 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 1169631 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 1179663 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 358553 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 358553 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 1795682 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1825574 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1825574 12080546 ~ 12083845 (-) True G77017

Expression Profile