RNA id: TU86230


Basic Information

Item Value
RNA id TU86230
length 841
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id G75597
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10293846 ~ 10295724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAGTAATGGCTTCCACCGAGACGCAGTCGCGTTTCGGTCAATCTGTTAAAGGTTTATTGTCTGATAAAGTGACTTCTTGCAGTGGAGATGTGATCGCTCTAACCCGTCAAGTGTTGAAAGGATCCCGGAGCCAAGAACTACTCAGTCAGGCAGCGAGAAATATGGTAATTCAAGAAGATGCCATTCTGCATTCTGAAGATAGTCTACGGAAAATGTCTATTATAACGACCCACTTGCAATATCAGCAAGAGGCCATTCAAAAGAATGTAGAACACTCCAAAAACCTGCAGGACCAGCTGAGACACTTGATGAAATAATGTAGCTATTCTAACATCATGCTGTGGATATAGACTACTCTAGTTTTTCATTGATTTTTTTTTTAACAGTAAATCACATCATTATTTGAGATTGCAGATGATGGCTCATTTCATGCAAAGGTCATCATCCTTCTCTTCTCTTCAGTTTGCTTCTGGTTGCTTTTGCAAAGCATGCATAAGACCTTCAAGTGAAGGCTTCTCTGTGAGAGACTATTTCCAGTATTCGTATTTGTCTTCATATATGTCAAAACAATATGAACTGTTTTTGTCTCATCTTTTTAAGCATAGATTTGTGTAAGAACATTTGCTTTTAGACTTTTAGGTCTTGAATTCATTGTGCACCAGCTGTACAAATTGTATTTTCTTTATTTACGTCTTGGTTTATGGTGTTATTGTTGTGCTAAACTTGAATATTTTTCTATAAAATGCCACAAATAATTGTTTCTGCACATTTTGCTAATTATTATTTTGTGTGTGTGTAAGCTTGGAGCAACTTTATTAAATGTATGTGGAAAACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86340 lncRNA downstream 40797 10253120 ~ 10253362 (-) True G75661
TU86309 lncRNA downstream 114329 10179129 ~ 10179830 (-) True G75630
TU86327 lncRNA downstream 203941 10090005 ~ 10090218 (-) True G75648
TU86326 lncRNA downstream 204886 10089056 ~ 10089273 (-) True G75647
TU86325 lncRNA downstream 207647 10086275 ~ 10086512 (-) True G75646
TU86348 lncRNA upstream 54439 10350106 ~ 10350365 (-) True G75669
TU86352 lncRNA upstream 58269 10353936 ~ 10354138 (-) True G75673
TU86354 lncRNA upstream 59577 10355244 ~ 10355471 (-) True G75675
TU86355 lncRNA upstream 59834 10355501 ~ 10355770 (-) True G75676
TU86357 lncRNA upstream 61674 10357341 ~ 10363188 (-) True CI01000012_10358145_10364166
CI01000012_10276814_10291389.mRNA mRNA downstream 1956 10276259 ~ 10292203 (-) True CI01000012_10276814_10291389
CI01000012_10255038_10257789.mRNA mRNA downstream 36357 10254900 ~ 10257802 (-) True CI01000012_10255038_10257789
CI01000012_10240747_10243942.mRNA mRNA downstream 50217 10240435 ~ 10243942 (-) True CI01000012_10240747_10243942
CI01000012_10217709_10222035.mRNA mRNA downstream 72124 10217208 ~ 10222035 (-) True CI01000012_10217709_10222035
CI01000012_10201667_10213604.mRNA mRNA downstream 80555 10201397 ~ 10213604 (-) True CI01000012_10201667_10213604
CI01000012_10303346_10315263.mRNA mRNA upstream 7496 10303163 ~ 10315900 (-) True CI01000012_10303346_10315263
CI01000012_10322141_10348992.mRNA mRNA upstream 26474 10322141 ~ 10348992 (-) True CI01000012_10322141_10348992
CI01000012_10358145_10364166.mRNA mRNA upstream 61689 10357356 ~ 10364166 (-) False CI01000012_10358145_10364166
CI01000012_10395715_10408849.mRNA mRNA upstream 99961 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10626417_10638842.mRNA mRNA upstream 330222 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
TU85530 other downstream 718187 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 718235 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 892191 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 1210670 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 1220702 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 316248 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 316248 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 1753377 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1783269 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1783269 12080546 ~ 12083845 (-) True G77017

Expression Profile