RNA id: TU86348


Basic Information

Item Value
RNA id TU86348
length 260
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G75669
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10350106 ~ 10350365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACTACATCTAGTGACAAAATCCCTAAATTGGCAACACTGAACTAGAGCTCTTGAAACCCCGCCCTCTGCTTAGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACTGAGCGTTTTTGCTCACCCTCAAAATGTGACAAATTTAACATGCTATAAAAATGATCTGTGGGTTATTTTGTGCTAAAACTTCACATACACACTCTGGGGACATCAGAGACTTATTTTACATCTTGTAAAAATGGTATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86232 lncRNA downstream 54382 10293846 ~ 10295724 (-) False G75597
TU86231 lncRNA downstream 54382 10294159 ~ 10295724 (-) True G75597
TU86230 lncRNA downstream 54439 10294159 ~ 10295667 (-) False G75597
TU86340 lncRNA downstream 96744 10253120 ~ 10253362 (-) True G75661
TU86309 lncRNA downstream 170276 10179129 ~ 10179830 (-) True G75630
TU86352 lncRNA upstream 3571 10353936 ~ 10354138 (-) True G75673
TU86354 lncRNA upstream 4879 10355244 ~ 10355471 (-) True G75675
TU86355 lncRNA upstream 5136 10355501 ~ 10355770 (-) True G75676
TU86357 lncRNA upstream 6976 10357341 ~ 10363188 (-) True CI01000012_10358145_10364166
TU86247 lncRNA upstream 140620 10490985 ~ 10501076 (-) True G75601
CI01000012_10322141_10348992.mRNA mRNA downstream 1114 10322141 ~ 10348992 (-) True CI01000012_10322141_10348992
CI01000012_10303346_10315263.mRNA mRNA downstream 34206 10303163 ~ 10315900 (-) True CI01000012_10303346_10315263
CI01000012_10276814_10291389.mRNA mRNA downstream 57903 10276259 ~ 10292203 (-) True CI01000012_10276814_10291389
CI01000012_10255038_10257789.mRNA mRNA downstream 92304 10254900 ~ 10257802 (-) True CI01000012_10255038_10257789
CI01000012_10240747_10243942.mRNA mRNA downstream 106164 10240435 ~ 10243942 (-) True CI01000012_10240747_10243942
CI01000012_10358145_10364166.mRNA mRNA upstream 6991 10357356 ~ 10364166 (-) False CI01000012_10358145_10364166
CI01000012_10395715_10408849.mRNA mRNA upstream 45263 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10626417_10638842.mRNA mRNA upstream 275524 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
CI01000012_10639383_10640319.mRNA mRNA upstream 288796 10639161 ~ 10640848 (-) True CI01000012_10639383_10640319
CI01000012_10696109_10703071.mRNA mRNA upstream 345391 10695756 ~ 10703186 (-) False CI01000012_10696109_10703071
TU85530 other downstream 774134 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 774182 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 948138 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 1266617 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 1276649 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 261550 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 261550 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 1698679 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1728571 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1728571 12080546 ~ 12083845 (-) True G77017

Expression Profile