Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU86247 |
| length | 8610 |
| lncRNA type | read_through |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G75601 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 10490985 ~ 10501076 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86357 | lncRNA | downstream | 127797 | 10357341 ~ 10363188 (-) | True | CI01000012_10358145_10364166 |
| TU86355 | lncRNA | downstream | 135215 | 10355501 ~ 10355770 (-) | True | G75676 |
| TU86354 | lncRNA | downstream | 135514 | 10355244 ~ 10355471 (-) | True | G75675 |
| TU86352 | lncRNA | downstream | 136847 | 10353936 ~ 10354138 (-) | True | G75673 |
| TU86348 | lncRNA | downstream | 140620 | 10350106 ~ 10350365 (-) | True | G75669 |
| TU86431 | lncRNA | upstream | 48994 | 10550070 ~ 10551220 (-) | True | G75751 |
| TU86285 | lncRNA | upstream | 186773 | 10696564 ~ 10696675 (-) | True | G75609 |
| TU86287 | lncRNA | upstream | 186773 | 10687849 ~ 10703783 (-) | False | G75609 |
| TU86482 | lncRNA | upstream | 213022 | 10714098 ~ 10764080 (-) | False | G75796 |
| TU86481 | lncRNA | upstream | 235645 | 10736721 ~ 10764080 (-) | True | G75796 |
| CI01000012_10395715_10408849.mRNA | mRNA | downstream | 82136 | 10395628 ~ 10408849 (-) | True | CI01000012_10395715_10408849 |
| CI01000012_10358145_10364166.mRNA | mRNA | downstream | 126819 | 10357356 ~ 10364166 (-) | False | CI01000012_10358145_10364166 |
| CI01000012_10322141_10348992.mRNA | mRNA | downstream | 141993 | 10322141 ~ 10348992 (-) | True | CI01000012_10322141_10348992 |
| CI01000012_10303346_10315263.mRNA | mRNA | downstream | 175085 | 10303163 ~ 10315900 (-) | True | CI01000012_10303346_10315263 |
| CI01000012_10276814_10291389.mRNA | mRNA | downstream | 198782 | 10276259 ~ 10292203 (-) | True | CI01000012_10276814_10291389 |
| CI01000012_10626417_10638842.mRNA | mRNA | upstream | 124813 | 10625889 ~ 10638963 (-) | True | CI01000012_10626417_10638842 |
| CI01000012_10639383_10640319.mRNA | mRNA | upstream | 138085 | 10639161 ~ 10640848 (-) | True | CI01000012_10639383_10640319 |
| CI01000012_10696109_10703071.mRNA | mRNA | upstream | 194680 | 10695756 ~ 10703186 (-) | False | CI01000012_10696109_10703071 |
| CI01000012_10705713_10710443.mRNA | mRNA | upstream | 204637 | 10705713 ~ 10710443 (-) | True | CI01000012_10705713_10710443 |
| CI01000012_10799203_10801485.mRNA | mRNA | upstream | 297702 | 10798778 ~ 10801537 (-) | True | CI01000012_10799203_10801485 |
| TU85530 | other | downstream | 915013 | 9575648 ~ 9575972 (-) | False | G74982 |
| TU85525 | other | downstream | 915061 | 9575648 ~ 9575924 (-) | False | G74982 |
| TU85327 | other | downstream | 1089017 | 9398076 ~ 9401968 (-) | True | CI01000012_09400481_09401810 |
| TU85337 | other | downstream | 1407496 | 9082736 ~ 9083489 (-) | True | CI01000012_09082056_09083285 |
| TU85325 | other | downstream | 1417528 | 9071371 ~ 9073457 (-) | True | CI01000012_09071892_09073410 |
| TU86281 | other | upstream | 110839 | 10611915 ~ 10620871 (-) | False | G75608 |
| TU86282 | other | upstream | 110839 | 10611915 ~ 10620871 (-) | True | G75608 |
| TU87807 | other | upstream | 1547968 | 12049044 ~ 12049222 (-) | True | G76984 |
| TU87842 | other | upstream | 1577860 | 12080546 ~ 12080752 (-) | False | G77017 |
| TU87843 | other | upstream | 1577860 | 12080546 ~ 12083845 (-) | True | G77017 |
