RNA id: TU86083


Basic Information

Item Value
RNA id TU86083
length 356
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G75469
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10686687 ~ 10687042 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCCAGTGATGTCAACTCAATTCTTCACTGTTAGCAGCCGTGTGGCTTCAGATGACCTTCCTTTAGCCATGAAATGACAAAGCGCATTTATGCCTTTGTCCAGGATATTACCCAGCTATTACACAGCTGTTCCCATCAAGCTTAATACACAGCGTGTGCACTGTGTACTTGAAAAAAGTGAGTCACACTTTGACAGTAAGCACTTACATAGAGTCTTACGTTGTGGTTAATTCCCTGTTTACATTGAGGTTTGTGCATTGACCCCTGCCAATATATACACTACAGTTCAAAAGTTTGGGGTTAGTAAGATATTTTTAATGTTTTTGAAATAAGTGTCTTTATGCTCACCAAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86082 lncRNA upstream 2 10686465 ~ 10686685 (+) True G75468
TU86081 lncRNA upstream 433 10686017 ~ 10686254 (+) True G75467
TU86055 lncRNA upstream 166564 10519203 ~ 10520123 (+) True G75442
TU86004 lncRNA upstream 184909 10500003 ~ 10501778 (+) False CI01000012_10499885_10500843
TU86005 lncRNA upstream 184959 10500003 ~ 10501728 (+) True CI01000012_10499885_10500843
TU86084 lncRNA downstream 200 10687242 ~ 10687474 (+) True G75470
TU86088 lncRNA downstream 17109 10704151 ~ 10704372 (+) True G75474
TU86091 lncRNA downstream 109377 10796419 ~ 10796654 (+) True G75477
TU86020 lncRNA downstream 233174 10920216 ~ 10922341 (+) True G75407
TU86008 lncRNA downstream 251855 10938897 ~ 10942836 (+) True G75398
CI01000012_10661067_10678624.mRNA mRNA upstream 7271 10660689 ~ 10679416 (+) True CI01000012_10661067_10678624
CI01000012_10608607_10619833.mRNA mRNA upstream 66229 10608607 ~ 10620458 (+) True CI01000012_10608607_10619833
CI01000012_10572910_10604787.mRNA mRNA upstream 81407 10572830 ~ 10605280 (+) True CI01000012_10572910_10604787
CI01000012_10502102_10533782.mRNA mRNA upstream 152745 10502102 ~ 10533942 (+) True CI01000012_10502102_10533782
CI01000012_10499885_10500843.mRNA mRNA upstream 185628 10499215 ~ 10501059 (+) False CI01000012_10499885_10500843
CI01000012_10714254_10788932.mRNA mRNA downstream 27212 10714254 ~ 10788932 (+) True CI01000012_10714254_10788932
CI01000012_10852509_10860759.mRNA mRNA downstream 162942 10849984 ~ 10860868 (+) True CI01000012_10852509_10860759
CI01000012_10892631_10918617.mRNA mRNA downstream 205589 10892631 ~ 10918617 (+) True CI01000012_10892631_10918617
CI01000012_10922409_10930704.mRNA mRNA downstream 235367 10922409 ~ 10931285 (+) True CI01000012_10922409_10930704
CI01000012_11011437_11013922.mRNA mRNA downstream 324322 11011364 ~ 11013931 (+) True CI01000012_11011437_11013922
TU85876 other upstream 462400 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 2319060 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 2319060 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 2319060 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 2878832 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU86153 other downstream 457775 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 1943713 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 2058489 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 2328464 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 2964817 13651859 ~ 13652234 (+) True G76645

Expression Profile